UFO05833.5prime Sequence
1093 bp (984 high quality bases) assembled on 2009-07-20
> UFO05833.5prime
CAGTCGACATGAAATTCATCGCCGTCTGCTTCTTCGCTGTTGTGGCTGTG
GCTGCTGCCAAGCCTGGACTTGTGGCTCCTCTGGCCGCCGCTCCTCTGGC
CTACACCGCTCCGGCTGTGGTGGGCAGTGCCGCGTACGTGGCTCCCTATG
CCTCCAGCTACAGCGCCCACTCGGTGGCTCACAGCGCAGCCTTCCCAGCT
GCCTACACCGCCGCCTACACCGCTCCCGTTGCTGCCGCCTATACCGCTCC
AGTGGCCGCTGCCTATGCCGCTCCCATCGCTCCCTACGCCGCCGCCTACA
CCTCGCCCCTGGCCTACAGCTCTCCCTATGTGGCCACCGCTGCCGCTCCT
CTGCTGCTGAAGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAAT
TACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCAT
TCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCA
GCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAA
ACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGT
GAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACC
CTTTAGGGAAATAGGCCAGGTTTTCACCGTACACGCCACATCTTGCGAAT
ATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACCTCCAGAGCGA
TGAAAACGTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGTGAACACTA
TCCATATCACCAGCTCACGTCTTTCATTGCAACGAATTCGGAAGAGACAT
CATCAGCGCAGATGTGATAAGCCGATAACCTGGCTTATTTCTT
UFO05833.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13679-RB | 489 | CG13679-RB | 66..424 | 7..365 | 1795 | 100 | Plus |
| CG13674-RB | 559 | CG13674-RB | 65..317 | 7..274 | 865 | 88.4 | Plus |
| CG13674-RA | 687 | CG13674-RA | 65..317 | 7..274 | 865 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8202933..8203280 | 18..365 | 1740 | 100 | Plus |
| 3L | 28110227 | 3L | 8218602..8218842 | 274..19 | 795 | 88.3 | Minus |
| 3L | 28110227 | 3L | 8222475..8222792 | 29..334 | 775 | 83.6 | Plus |
| 3L | 28110227 | 3L | 8218581..8218639 | 271..213 | 190 | 88.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:59 has no hits.
UFO05833.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:00 Download gff for
UFO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 58..427 | 1..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:10 Download gff for
UFO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 60..429 | 1..373 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:20 Download gff for
UFO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13679-RB | 60..429 | 1..373 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:20 Download gff for
UFO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8202929..8203280 | 14..365 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:10 Download gff for
UFO05833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8196029..8196380 | 14..365 | 99 | == | Plus |
