UFO05834.5prime Sequence
1096 bp (999 high quality bases) assembled on 2009-07-20
> UFO05834.5prime
CAGTCGACATGTTTACACTTGCTTCATATTGGCGCGAATCATTCAAGATT
GTTCTTCCGCTGCAGGCGATGAAGCGTACGAAGGCGCAGAAGGCAGGTCC
TTCCAAAAAGGCAGCAAAAAACGAGAAGGCCAGCTCCGAGCCCAAAAGTG
ACCAGGAAAGCAGCGATGAGGAGGCCTCCACATCGAAGGCTTTGTTGGTT
TCTAAGCCGGATTACCAAAACTTCGAGCAGTTTCTTACCCACTTGGAACA
CCAGCGAGTCTGCACGGCAGCCAACATACAGGAGTTCTCTTTTCGAAAGA
AACGAGTGCGCGTTCTGTCCAAAACCGAAGATGTAAAGGAATCCAGCCTA
GGCGGCGTCGTCTACTGGATGTCCCGCGACGGGCGCGTACAGGACAACTG
GGCCCTGCTCTTTGCCCAGCGTCTGGCTCTCAAGCTGGAATTACCCTTAA
CTGTGGTATTTTGCCTAGTTCCCAAATTCCTGAATGCCACTATCAGGCAC
TACAAATTCATGATGGGCGGCCTGCAGGAGGTGGAGCAGCAGTGTCGCGC
CCTTGACATACCGTTTCACCTGCTGATGGGCTCCGCTGTTGAAAAGTTAC
CACAATTTGTGAAATCCAAGGACATCGGAGCCGTAGTCTGTGACTTTGCT
CCGCTGCGTTTGCCACGCCAATGGGTCGAGGATGTGGGCAAGGCACTGCC
CAAGAGCGTGCCGTTGGTGCAAGTCGATGCTCACAATGTAGTCCCCTTGT
GGGTGGCCTCCGACAAACAGGAGTACGCTGCGCGTACCATCCGCAACAAG
ATCAACTCCAAGCTAGGGGAGTACCTCAGCGTATTCCCACCAGTTGTGCG
GCATCCTCATGGAACTGGCTGCAAGAATGTGAATACCGTGACTGGTCAGC
TGCTTATGCTTCGCTGCAGTGCGACATGGAAGTGGACGAGTGCATTGGGC
CAAGCCGGGTATAAAGCAGCTGCAGCAGCTCTACGAGTTCTGCAGTCGGT
CGTTTGCTCCATTTCATGACAACGAAACGATTCCACGCAGACGCATTGTC
GGACTCTCGGATGCTGCACTTGTCAAATTCGCTCACGCTGTGCACT
UFO05834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phr-RA | 1915 | CG11205-RA | 216..1318 | 9..1096 | 5010 | 97.8 | Plus |
| phr-RB | 1737 | CG11205-RB | 80..1140 | 51..1096 | 4800 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7825600..7826606 | 51..1050 | 4535 | 98.5 | Plus |
| 2R | 25286936 | 2R | 7825504..7825547 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:06 has no hits.
UFO05834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:33:50 Download gff for
UFO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 8..1085 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:51 Download gff for
UFO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 211..1288 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:34 Download gff for
UFO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phr-RA | 211..1288 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:34 Download gff for
UFO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7825499..7825545 | 1..50 | 92 | -> | Plus |
| 2R | 7825600..7826612 | 51..1055 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:51 Download gff for
UFO05834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3713004..3713050 | 1..50 | 92 | -> | Plus |
| arm_2R | 3713105..3714117 | 51..1055 | 98 | <- | Plus |
