UFO05837.5prime Sequence
1094 bp (982 high quality bases) assembled on 2009-07-20
> UFO05837.5prime
CAGTCGACATGGTAAAGAGTTGCCTGATCTTGTGCTTCTTCGCTCTCCTG
GTCATCCAGGCCCGGAGTGATCTAGCCGATGACCAAGAGCACGCCCAACA
TCCCCGTCTGCAATCATCACGCGACTTCGAGGCCCTCGACGAGGAGCTGG
ACACACGATTCTGGCACGATAAGGCCCAATCGATTCTGGCCGATAAGCTG
GCCGGCCATAAAAAGCTCAACGAGAATCGCGCCAAGAACGTGATCCTATT
TTTGGGCGATGGCATGTCCGTTCACACGATCGCGGCCACACGTGCTTTCA
TGGGCGATAGCAACAAGCAGGTCTTCTTCGAGAAGTTCCCCTACTTGGGT
CTGTCCAAGACGTATGCCGTCAACGAGCGTACTCCGGACTCGGCCAACAC
TGCTACGGCCTATTTGACCGGAGTCAAGGCCAACTATGGCACCATTGGAG
TCAATGCCCAGGTGCAGAGGGGCGACTGTGTGACCAATTCGAGTAGCCAT
GTCCAGAGCATTGGTCAGTGGGCCCAGGAGGCCGGCAAGTGGGCCGGTTT
GGTGACCACCGCCCGGGTGACACACGCTTCTCCAGCCGGAGTTTATGCCC
ATGTTTCCGAACGGAATTGGGAGCACGATGGTGAAATCATCAGCTCCAAA
TGCAGTCCCGACGTCAACACCGATATTGCCCGGCAGCTGGTCGAGTGGCC
AGTGGGTCAGGAACTACGCGTCATCATGGGCGGCGGTCGATCCTATTTTC
GGGATCAGTCCCAGCACGATGAGACTGGCGTTTCGGGCTTGCGAACCGAT
GGACGCGATCTGATCAGCGATTGGCGAGAGATCAAGAAACAGCAGGAGCG
GAGGGCAAGTACGTCTGGTCACTTAAAGGCCTGAAGGAAACGGATATTAG
CAAGACGGATTACCTTCTCGGTCTCTTCGACACCTCCCATCTGCCCTACC
ATGGCGATCGTCGCCGTACCCATTATGAAGATGGAGGAGCCTTCCCTTCC
GAAATGACAGAAGCCGCCATCAGATGCTCAGCAGACGAGGAGGTTACTTC
TTCTCTGGAGAGTGGATGCATGATTGCCATCACGCACAGGCATG
UFO05837.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10592-RA | 1749 | CG10592-RA | 63..1132 | 9..1071 | 5025 | 98.5 | Plus |
| CG10827-RA | 1674 | CG10827-RA | 558..642 | 517..601 | 185 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5593470..5594412 | 1033..93 | 4465 | 98.7 | Minus |
| 3L | 28110227 | 3L | 5595126..5595210 | 93..9 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 21006349..21006433 | 601..517 | 185 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:37:43 has no hits.
UFO05837.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:04 Download gff for
UFO05837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1113 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:14:47 Download gff for
UFO05837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1113 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:59 Download gff for
UFO05837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10592-RA | 63..1113 | 9..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:59 Download gff for
UFO05837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5593446..5594411 | 94..1054 | 98 | <- | Minus |
| 3L | 5595126..5595210 | 9..93 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:14:47 Download gff for
UFO05837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5586546..5587511 | 94..1054 | 98 | <- | Minus |
| arm_3L | 5588226..5588310 | 9..93 | 100 | | Minus |
