UFO05838.5prime Sequence
1094 bp (961 high quality bases) assembled on 2009-07-20
> UFO05838.5prime
CAGTCGACATGGAGGACACAAAAGCTCCAGCGGCAGCGCAGGCGCAAAGT
CATCCTTTGGAGGATGTGTCCCTCAATGGGAACGATGACGACAAGCAGAC
GCCCAAAAATTGGGTTAAATTCGACGACGAAGCGGATAGCGGTGAAAAAA
ACAATAACAGTAACGACGGCGATGCCACACAGCAGCAACAACAACAAAAC
AAGTTAACTCTGCCGCCACCGCCGTCGGTGGTTAGTAGCAACAACAACAG
GAGGGCGCGCTCGCGCAGTCCGTCCGCTACAGTAACAACAACCACACCTG
TCCAGCGCCCGGCAGTTTCCTCGACCACAGCTGCGACACCGGGCGAAGTG
CAGCCGCATGCCCCTCCGCCGGATGTGGCGCCCGCTGTTCTGACAACCGA
GAGCACGCACGTTAATCTGAGTGCATCCGGCAGTGGCATCGTCAGCGGAG
CAAGTGCGAATGCAAGTGCGAGTGGATACGCACCTGGCCCGGTCCGCCAT
ACCCCGCAGCTACCAAACCAAAAAGCCGCCGCCGCCCCCTCTCTATCGTC
CGCTGGCGCGGCATCCTCCGGACATCAGCATAATGGAGGTGGCGCCAACG
GAACTGGAATTAGCCAGCCGGCGGACCAGGGATCCGGGATGCGCACAATC
GAATTGTCAACGGGTCGTATACGCGAGGGATTCGCAAATGGCGATGTGAT
TGTCACACTTCTGCCGGCCAACACGAAGTGGCCGTGGATAACCCCAGCCA
TATTCCGTCCGGAACTGGTGCCCGAGGAGCTGATGGCTCAGGTCTGACGC
TCACTGTGGAGGACTATGTGAACGCGATGGAGACGCTAGTAAACGACTAC
CGCTTCACCGTGTACACATCTGCTACAAGCGCATCCTGGTCTGCTGGATC
CTGTTCGCATTTACGTTTTGCTGGCCCTGCTCTTTCGACTGCAGGTGTGG
CCCTGTTCGCCCTGGGGAGTGGGCTGGCTATCTGACGCGGCGGCATCTTC
CTGGTGCATGTGGTGAGCTGCCCTGTCCGGCGCTGAAATGCTGCAGATGA
CGCAGCTATGCCCCACAGATCTGCTGGTCTGGACGATCGGGCGC
UFO05838.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18507-RE | 2004 | CG18507-RE | 302..1315 | 9..1013 | 4760 | 98.6 | Plus |
| CG18507-RD | 2041 | CG18507-RD | 302..1315 | 9..1013 | 4760 | 98.6 | Plus |
| CG18507-RC | 2404 | CG18507-RC | 302..1315 | 9..1013 | 4760 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13667971..13668353 | 302..684 | 1915 | 100 | Plus |
| 2L | 23513712 | 2L | 13665826..13666122 | 9..305 | 1485 | 100 | Plus |
| 2L | 23513712 | 2L | 13668863..13669050 | 799..981 | 635 | 95.2 | Plus |
| 2L | 23513712 | 2L | 13668689..13668797 | 684..792 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1110..1169 | 150..210 | 131 | 72.6 | Plus |
| aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2306..2338 | 59..91 | 120 | 84.8 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 4358..4389 | 60..91 | 115 | 84.4 | Plus |
UFO05838.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:05 Download gff for
UFO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RB | 291..1277 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:33 Download gff for
UFO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RC | 294..1280 | 1..981 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:28 Download gff for
UFO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18507-RC | 294..1280 | 1..981 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:28 Download gff for
UFO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13665818..13666122 | 1..305 | 99 | -> | Plus |
| 2L | 13667975..13668353 | 306..684 | 100 | -> | Plus |
| 2L | 13668690..13668805 | 685..799 | 99 | -> | Plus |
| 2L | 13668864..13669081 | 800..1009 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:33 Download gff for
UFO05838.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13665818..13666122 | 1..305 | 99 | -> | Plus |
| arm_2L | 13667975..13668353 | 306..684 | 100 | -> | Plus |
| arm_2L | 13668690..13668805 | 685..799 | 99 | -> | Plus |
| arm_2L | 13668864..13669081 | 800..1009 | 94 | -> | Plus |
