UFO05840.5prime Sequence
1143 bp (1012 high quality bases) assembled on 2009-07-20
> UFO05840.5prime
CAGTCGACATGATCAAGGCGGCTGCTGAGGATCGCATCTCAACAAAGAGC
GTCGGGTATGCGTGGGTCTCTCCGGAGGCCACAGTGTCCCGAACGGAGAC
GGTTGGCGGCGACGATATCATCGAGTTCGAACCCAAGGAGGAGCTCGATG
AGTCGGAGAAAAGCCCACTTCCCCAAATTCATGCTGTACCATTTGCCGGC
CATGACAACTTAAAAATGGAAGAACCTCTGCCGAGCGAGAGTCCGTTTCA
CAAGGACATTGCCTTCTTTGTCTGCCGTGACCGCCAGTCATTGCAGATTG
TGCAGGGCGAGGGATTCCAGCACCTAGTGAAAGTACTGTGCCCCACCTAC
AGACCACCGAGTGCGGCGAAACTGGAGGCCATTATCTGCAGGGAGTCGGA
AGCGCAGAGGTCCAAGCTCTGCCAGCAGTTGGCCGACATCTCGACACTCA
GCCTAAGTTGCTCGGTGCACACGAATGCGGAGAGTCGAAGCTGGATGGAG
CTGGTGGCCCACTTTCACGAGGGGCGGCAACGAATCTCCCGAACTCTTTC
TGTGCTGCGCCTTCCCGATCTTTTCACCTCCAACGATCTGGTGGATCGCA
TGGACCAAGTGTGTCAGCGCTTCGACATTCCAAAGTCAAGGATCTGCTGC
GTGTCGACAAGGAGCAGTCAACTACTGGAGGATGCGGTGACATCGTTCAT
GGGCGCTCATCATCATGTTCCCTGCTTCGCAGACCAATTGAATTCTATTT
TAGAGGAGGTGGTGCAGCGCCCAGAAATACGTCATTTGCGCGACAAGGTG
CGTTCCCATGTGCAGTCCACATTGCAGCTGAATCCCCAACTGGATTCCAT
ACACCGACCGATTAGTGTGTACAATATGCTAGACTTATACCTGAAAAAGA
CTCTCGTTCAAGAGCCGCTGCCGCTTTCGACATCGGAGGGGGGATTTGTT
GTCAGCAATTGCTGGACGTGCTGAAGGCCGTTGACCAGCCTCCATGCGTT
GAGCTAAGTCGAACACCATATCCGGCGGGCAGCACAGCCCTGCCCATTGC
CCAACTCTGATCACGAACTGAAGCAAGGAGAAAGAGTGCGGAACACATGG
TTGCAAGGAAATAGCTTGTTCTGGTCAGCACCTGGAGAAATCT
UFO05840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16863-RA | 2237 | CG16863-RA | 441..1568 | 9..1137 | 5260 | 98.3 | Plus |
| CG16863-RB | 2184 | CG16863-RB | 388..1515 | 9..1137 | 5260 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13791665..13792562 | 206..1108 | 4015 | 98.6 | Plus |
| 2L | 23513712 | 2L | 13791399..13791595 | 9..205 | 970 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:01:37 has no hits.
UFO05840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:07 Download gff for
UFO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RA | 431..1557 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:58 Download gff for
UFO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 382..1508 | 1..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:38 Download gff for
UFO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16863-RB | 382..1508 | 1..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:38 Download gff for
UFO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13791393..13791595 | 1..205 | 97 | -> | Plus |
| 2L | 13791665..13792588 | 206..1130 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:58 Download gff for
UFO05840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13791393..13791595 | 1..205 | 97 | -> | Plus |
| arm_2L | 13791665..13792588 | 206..1130 | 98 | | Plus |
