UFO05841.5prime Sequence
1135 bp (1015 high quality bases) assembled on 2009-07-20
> UFO05841.5prime
CAGTCGACATGTGGACCATTCTCCTGACGATCCTAATCGCGGGTCTGCTG
TACAGATATGTGAAGCGGCACTACACTCACTGGCAGCGATTGGGAGTCGA
TGAGGAGCCGGCAAAGATTCCCTTTGGCGTAATGGATACTGTCATGAAGC
AGGAACGAAGTTTGGGCATGGCTCTGGCTGATATATACGCCCGGCACGAG
GGCAAAATCGTTGGCATATACATGTTGAACAAACGAAGTATCCTGATCCG
AGATGCCCAATTGGCTCGCCAAATCATGACCAGCGATTTCGCCAGTTTCC
ACGATCGCGGGGTGTACGTGGACGAGGATAAGGACCCGTTGTCGGCCAAC
CTTTTTAACCTAAGAGGTGCTTCATGGCGAAATCTACGTCAGAAACTTAC
GCCGTCGTTCTCCTCCGGCAAAATTAAGGGCATGTTCGGCACCATCGACG
ACGTGGGCGATAAGTTGGTGCAGCATTTGGAGGGGGCCCTTGACCAAAGC
GATGAAGTGGAGATCAAGGATGTGATGACCACGTATGCGGTGGACATCAT
TGGGTCAGTCATTTTTGGCTTGGAGATAGACAGCTTCCGAAATCCAAAAA
ACGAGTTCCGCGAGATCAGCAGCTCTACGTCTAGGGATGAATCTCTGCTG
CTGAAGATTCACAATATGTCCATGTTCATTTGTCCACCGATTGCTAAGCT
AATGAACCGCTTGGGCTACGAAAGCCGCATTCTGACATCCCTGCGAGACA
TGATGAAGCGCACAATCGAGTTCCGGGAGGAGCACAACGTGGTGCGAAAG
GACATGCTGCAGCTGCTGATCCGCCTCCGAATACGGGCAAGATTGGCGAG
GACGACGACCAGGTGTGGGACATGGAAACCGCACAGGAGCAGCTGAAGTC
TATGTCGATCGAGAAGATTGCCGCCCAGGCATTCTTGTTCTACGTGGCGG
GCTCGGAATCACAGCTGCGGCGTCTGCCTTCCTCCTCTACGAGCTGTTCA
TGTATCGGAACTGCTGAGGAGGCGCAGAAAAATGGATGCTGGTGGCTTAT
GAACCACATTCTGAGCCAGATAGGTTCACCCTACGAGGCGGGGGCAGCGA
CTAAGGTTCTGGAAGTCTGCATCATGAACATTCGC
UFO05841.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp6d2-RA | 1759 | CG4373-RA | 113..1237 | 9..1126 | 5050 | 97.4 | Plus |
| nsr-RB | 2523 | CG3875-RB | 2149..2523 | 1126..759 | 1300 | 92.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22653738..22654418 | 689..9 | 3405 | 100 | Minus |
| 2R | 25286936 | 2R | 22653334..22653665 | 1017..689 | 1435 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:57 has no hits.
UFO05841.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:09 Download gff for
UFO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 104..1215 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:14 Download gff for
UFO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 107..1218 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:52 Download gff for
UFO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp6d2-RA | 107..1218 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:52 Download gff for
UFO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22653240..22653665 | 689..1108 | 93 | <- | Minus |
| 2R | 22653739..22654424 | 1..688 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:14 Download gff for
UFO05841.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18540745..18541170 | 689..1108 | 93 | <- | Minus |
| arm_2R | 18541244..18541929 | 1..688 | 99 | | Minus |
