UFO05842.5prime Sequence
1157 bp (1010 high quality bases) assembled on 2009-07-20
> UFO05842.5prime
CAGTCGACATGCCGTACACACCAGAAAATTCCTACGATAATGATCAAAAG
ATCTGGAGCGGTGAGCCGGTTGTCAAATACTTCGATCCGGACTTGTCCAT
CGGAGAGATAATTTTCCACGAGATGCGGCGGCATCCGCAGCTTACTGCCC
AGATCTCTGCTACGGAGGGTACTGTGTTGACCAGAGGGGAGCTCCTTGCC
AACGCCATGCGCTTGGCCAGCTATATGCGATCATTGGGACTCCTTCAATC
CGATATAGTGGGCCTCATAGGCCGGAATACCACCCACATGCTTGCCGTAG
CCTACGCCTGTTTCTTCAACGGAATAGCTTTTCACTCACTCAACATTACA
TACGATCGCGATACGATCGAAAAGATCTACAAGGTCACAAGGCCTTCTAT
TATTTTCTGCGATGGAGATGAGTTTGAGAAGGTTCGATCTGCCACTGCAG
AACTGGATGTTAAGATTGTCACCATGCGCAATCATCCGTTGGATTCCATA
AAGATCGATGAAGTTGTGGCCACGCCCATCGAAGAAAACTTCCAGCCAGC
TAAGCTGGAAAAGGGCAACGATCAGACTTTGGCCATTCTCTGCTCTTCGG
GAACAACTGGTACTCCAAAGGCAGTAACTATAACTAACAGTCGGCACATC
CTCGCAGGCAACTATCATCTGACCACCGCTGATGTTCAGTACTCTCACAA
CACCCTTGACTGGATCACTGGTTTGCTTACCACCATTACCTCCGGAGTGT
TCAGCACTACCCGCATCATTGCGGACAATGCCTTCGATCCCGCCTTTGCC
TTGCGAATCATCGAAGAGTACAAAGGTTACGTGGACCATACAGCCACCAT
CATCTATGGCTCTAATGATTAACTGCCCAGATTTCGAGACGTGCGATCTG
TCGAGCCTACGGTGCTACATGTTTGGAGGATCTCGGGCTGCCTTGGAGGT
TCAAAAAGGCATCCGTAGCCGTCTTAGCATATTGCCTGCAGTTTGTTATG
GAATTACAGAACTGGGTGCCATGGCCACCATCAACTGTCACTCGACGAAA
AAACCGATCGGTGGTCAATGGTCAATGGCTAGATGAGTATGATGACGGCG
ATCGCTGGACGATGGAATCGGAAGGGTGCATCATGAAATAACACACTGTC
GATCTAC
UFO05842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11659-RA | 1705 | CG11659-RA | 51..1201 | 9..1137 | 5145 | 97.5 | Plus |
| CG6300-RA | 1724 | CG6300-RA | 51..1126 | 9..1078 | 5050 | 98.4 | Plus |
| CG11407-RA | 1789 | CG11407-RA | 63..844 | 9..790 | 1180 | 77.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19776520..19777033 | 664..151 | 2570 | 100 | Minus |
| 3R | 32079331 | 3R | 19772462..19772975 | 664..151 | 2510 | 99.2 | Minus |
| 3R | 32079331 | 3R | 19776063..19776457 | 1056..665 | 1690 | 97.5 | Minus |
| 3R | 32079331 | 3R | 19772005..19772399 | 1056..665 | 1660 | 97 | Minus |
| 3R | 32079331 | 3R | 19781508..19781998 | 150..640 | 940 | 79.4 | Plus |
| 3R | 32079331 | 3R | 19773032..19773175 | 152..9 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19777087..19777230 | 152..9 | 720 | 100 | Minus |
| 3R | 32079331 | 3R | 19781308..19781441 | 9..142 | 220 | 77.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:30:06 has no hits.
UFO05842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:10 Download gff for
UFO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1217 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:13 Download gff for
UFO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1217 | 1..1151 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:23 Download gff for
UFO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11659-RA | 47..1217 | 1..1151 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:23 Download gff for
UFO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19776038..19776457 | 665..1078 | 97 | <- | Minus |
| 3R | 19776520..19777031 | 153..664 | 100 | <- | Minus |
| 3R | 19777087..19777234 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:13 Download gff for
UFO05842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15601760..15602179 | 665..1078 | 97 | <- | Minus |
| arm_3R | 15602242..15602753 | 153..664 | 100 | <- | Minus |
| arm_3R | 15602809..15602956 | 1..152 | 97 | | Minus |
