UFO05844.5prime Sequence
1127 bp (1019 high quality bases) assembled on 2009-07-20
> UFO05844.5prime
CAGTCGACATGCGGCGCGCATCTCGATTGATTCCGTTCGGTTTCGTCATC
CTGCTCCTGATTCTTCTGCTCCTCCAGCCATCGACAGACGGCCACACACT
GGGCGCCAGCTGCCAGACGCCCGAGAAGAGCGAAGGACGCTGTGTGCACT
TCAGCTCCTGCCGGCTCGTCTTGCGTCACTATGCGATGTACAAGGAGCAC
ATGCCGCCAGCGATAATGCGATTCCTGCAGAGGGTCCGTTGCAAGCCGAA
ACGCGAAGGCTATCATTTGTGCTGCGAACTCAAAGATGTGATTCCCGCGA
ACGCCAACTCCAAGTTGAAGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGG
TGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAA
CTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAAT
AAACCCTTTAGGGAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTG
CGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGTATTCACTCCAGAG
CGATGAAAACGTTTCAGTTTGCTCATGGAAACCGGTGTAACAAGGGTGAA
CAACTATCCCATAATCACCAACCTCACCGTCTTTCATTGCCATACGAAAA
TCCCGGATGAAGCATTCATCAGGGGGGCAGGAATGGTGAATAAAGGCGGA
ATAACTGTGCTTATTTTCTTACGGTCTTTAAAGCGTAATATCACTTGACG
ACTGTTTAGTAATTGGACACTGACTGA
UFO05844.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31337-RA | 849 | CG31337-RA | 186..497 | 9..320 | 1560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13544546..13544706 | 260..100 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 13545125..13545215 | 99..9 | 455 | 100 | Minus |
| 3R | 32079331 | 3R | 13544318..13544377 | 320..261 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:13 has no hits.
UFO05844.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:11 Download gff for
UFO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 162..484 | 1..324 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:54 Download gff for
UFO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 162..484 | 1..324 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:38 Download gff for
UFO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31337-RA | 178..500 | 1..324 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:38 Download gff for
UFO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13544318..13544377 | 261..320 | 100 | <- | Minus |
| 3R | 13544546..13544706 | 100..260 | 100 | <- | Minus |
| 3R | 13545125..13545219 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:54 Download gff for
UFO05844.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9370040..9370099 | 261..320 | 100 | <- | Minus |
| arm_3R | 9370268..9370428 | 100..260 | 100 | <- | Minus |
| arm_3R | 9370847..9370941 | 1..99 | 95 | | Minus |
