UFO05848.5prime Sequence
1080 bp (981 high quality bases) assembled on 2009-07-20
> UFO05848.5prime
CAGTCGACATGAGCAATACTCAGCACTTAACTATTGGCTCGCCAAAGCCC
GTATTTCCGGATGATGGGATCTTAAAGCTGTATTCGATGCGCTTTTGCCC
CTATGCACACCGTGTGCACCTGGTCCTGGATGCCAAAAAGATTCCCTACC
ACGCTATCTACATCAATCTTCGCGACAAACCCGAGTGGTTCTCCCTGGTG
AGCAGCTCCACAAAGGTGCCGGCACTGGAGCTGGTCAAGGAACAGGGAAA
TCCTGTGCTGATCGAGTCGCTCATTATTTGTGACTACTTGGACGAAAAGT
ATCCGGAGGTGCCATTGTATCCCAAGGATCTGCTTAAAAAAGCCCAGGAG
AAGATTTTAATCGAACGTTTCGGACAGTTCATCAATGCCTTCTACTACCT
GTTGCTGCACGACAATCCCGAGCAGCTGGTTGACACCGATCACTATGCCG
GATTGGTCGTTTATGAGGAGGAACTGAAGCGACGTTGTACCAAGTTCTTT
GGTGGCGACAGCCCAGGCATGCTTGACTACATGATGTGGCCCTGGTGCGA
GCGCTTTGACTCTCTGAAATACACTTTTGAACAAAAATTCGAATTGAGTC
CGGAACGTTTTCCCACTTTGATTAAGTGGCGCGACTTGATGATCCAGGAT
CGTGCTGTCAAGTGTTTCTATCTGGATGGACAGACCCATGCCAAATACAT
GAACTCCCGGCGATCGGGCCAGGCCGATTATAATATGCTATACAATGAGG
CCAAACGTGTCAAATTGGGGGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAAT
AAAAAACGCCCGGCGGCACCGAGCGTTCTGAACAATCCAGATGGAGTTCT
GAGGTCATTACTGGATTTTTCACAGGAGTCCAGCGGAGCTCGATATTCAA
ATTACGCCCCCGGCCTGCCACTCTTGCAGGAACTTGGTTTGTTAATTTAA
TTAGCATTCTGCGAAATGGGAGCCATCACA
UFO05848.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstO1-RA | 954 | CG6662-RA | 65..826 | 9..770 | 3810 | 100 | Plus |
| se-RA | 825 | CG6781-RA | 108..218 | 78..188 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8524134..8524718 | 620..36 | 2925 | 100 | Minus |
| 3L | 28110227 | 3L | 8523953..8524075 | 742..620 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 8520715..8520825 | 78..188 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:04:55 has no hits.
UFO05848.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:03 Download gff for
UFO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6662-RA | 60..821 | 9..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:21 Download gff for
UFO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..826 | 9..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:10 Download gff for
UFO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstO1-RA | 65..826 | 9..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:10 Download gff for
UFO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8523870..8523897 | 743..770 | 100 | <- | Minus |
| 3L | 8523953..8524074 | 621..742 | 100 | <- | Minus |
| 3L | 8524134..8524717 | 37..620 | 100 | <- | Minus |
| 3L | 8524775..8524802 | 9..36 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:21 Download gff for
UFO05848.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8516970..8516997 | 743..770 | 100 | <- | Minus |
| arm_3L | 8517053..8517174 | 621..742 | 100 | <- | Minus |
| arm_3L | 8517234..8517817 | 37..620 | 100 | <- | Minus |
| arm_3L | 8517875..8517902 | 9..36 | 100 | | Minus |
