UFO05853.5prime Sequence
568 bp (489 high quality bases) assembled on 2009-07-20
> UFO05853.5prime
CAGTCGACATGATGTACAAGTTATGGTGGAAATTGCTTCTCCTCCAGGCT
TCTGGGTGTCTATCTCTGGAGAGTCGCCCAGATCCACGCATAGTCGGTGG
CTTCCCAGCCGATATCGCCAACATTCCGTACATAGTGTCCATCCAACTGT
ACGGCATCCACCATTGTGGCGGCTCCATAATAAATAACCACACCATCCTA
ACGGCTGGCCATTGTCTGAACGGAGTGCCACATCGCCTGCTAAAAGTTAA
GGTCGGCGGAACGTCGCGCTACCGAAAAGATGGGGAACTGTTCTCGGTCG
CTGACCTGCAAGTCCACGAGAATTTCAATCCCAAGACCATGGACTATGAC
ATCGGTATCATCAGGTTGACCAAAAACCTAACACTATCTAGAAAGGTAAA
GGCCATTCCCATAAACCCAGAGAGAGTAGCCGAAGGCCCCTATGCCACCA
TTGCCGGCTGGGGATTTAAGTCCATGAATGGTCCCTCCCTCCGGACAGTC
TGAAGATATGCCCGAGTGCCGATCGTGAATCAGACCGCCTGGCGGAACCC
ACCGGGCAAAACTGTACC
UFO05853.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7829-RA | 976 | CG7829-RA | 37..590 | 9..565 | 2620 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29817340..29817728 | 397..9 | 1930 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29817124..29817292 | 565..394 | 635 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:06 has no hits.
UFO05853.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:37 Download gff for
UFO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 31..593 | 1..568 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:24 Download gff for
UFO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 31..593 | 1..568 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:41 Download gff for
UFO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7829-RA | 31..593 | 1..568 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:41 Download gff for
UFO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29817120..29817290 | 396..568 | 94 | <- | Minus |
| 3R | 29817342..29817734 | 1..395 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:24 Download gff for
UFO05853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25642842..25643012 | 396..568 | 94 | <- | Minus |
| arm_3R | 25643064..25643456 | 1..395 | 98 | | Minus |
