Clone UFO05854 Report

Search the DGRC for UFO05854

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:58
Well:54
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptRpL34b-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05854.5prime Sequence

264 bp (206 high quality bases) assembled on 2009-07-20

> UFO05854.5prime
CAGTCGACATGGTCCAACGTCTGACGCTCCGGAGACGCCTGTCCTACAAC
ACACGCTCCAACAAGCGGCGCATTGTTCGCACGCCCGGTGGTCGTCTGGT
TTACCAGTATGTGAAGAAGAACCCCACCGTGCCCCGTTGCGGCCAGTGCA
AGGAGAAGTTGACGGGTATCACCCCCTCCCGCCCCAGCGAGCGCCCCGCA
TGTCAAGCGCTGAGACGTGTCAGACTACGTGAGTGCTGTGCACACTGCTG
GGGCGTCTGCGCTC

UFO05854.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
RpL34b-RD 622 CG9354-RD 48..251 9..210 955 98.5 Plus
RpL34b-RC 589 CG9354-RC 15..218 9..210 955 98.5 Plus
RpL34b-RA 771 CG9354-RA 197..400 9..210 955 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9400755..9400878 197..74 605 99.2 Minus
3R 32079331 3R 9400942..9401006 73..9 325 100 Minus
3R 32079331 3R 26058794..26058917 197..74 320 83.9 Minus
Blast to na_te.dros performed on 2014-11-28 18:57:20 has no hits.

UFO05854.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:36 Download gff for UFO05854.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..414 1..221 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:56 Download gff for UFO05854.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..414 1..221 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:49 Download gff for UFO05854.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL34b-RA 190..414 1..221 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:49 Download gff for UFO05854.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9400726..9400878 74..221 96 <- Minus
3R 9400942..9401013 1..73 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:56 Download gff for UFO05854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5226448..5226600 74..221 96 <- Minus
arm_3R 5226664..5226735 1..73 95   Minus