UFO05857.5prime Sequence
1115 bp (993 high quality bases) assembled on 2009-07-20
> UFO05857.5prime
CAGTCGACATGTCATGGACGAGTGGCCTGTACAAGTCCTTGCTCCTTCGG
AGCCAGCAATCGCTTGTGCGTCCGGATCTCGCCCTCCTGGACATCCAGAT
ATCGAAGCGGGCCATTGAAACGATGTTCGGTCATCGAAGGGAATTGAGTT
TCAATCATTCACATACCGCCGACATCATTGCCAAGAAGTGCGAAGAGCTT
TTCAATGCCAACGAATTTGAGAACGCCCTAACCACGCTTTATACGGACGG
ACGTCCCTTTGGCGGACAATTTGCCCACGGGCGGTTCGAGATGATCAAGC
AAAGGAGCCTCGCTGTCTTCGAAGACACCTTGGGCGAATCCCTGCGTCCC
TTTATGCATCAGCACAGGGACGTCCTGGAGCAAATCAACCGACGCCAGAA
GGAGCTGGCCGCCCATGTGTCCCGCCCACTTTGGAAGAAGCTGCGCGACC
AACAGCAGTGCGACGTCCAGAGTATCATTATCAAGGAGCGGCCGCAGTTG
ACCTTACTAGAAAAGGCCCGCCGGCGGGCGAGTGAGAGTCTGTACAACCA
CAACTACTTGGGCCGCAGCGCCGTCGATATCGCGCTGCTGCGTCAACTGC
GCAGCGACCGCAACTTCCTCGATCCCCTGAGGCTTGCCACCACGCCCCCA
ATGCGCAAGCTGACCAGAAGGCAGTTCACGATTGTGCGGCGGCTTATGAA
AATGCTTCAAGCCCGAAATCCGTTGTACAACCGGCGGTACGTGCAACAAC
GGCACGGTCCGATTGCAGACCAGGAGCGGCGTCGGTGGCAGGAGATGCAC
CTGTTCCATGCGCAGTACCAGACGCGACGCGACTGCATGCGGATGCTGCA
CGAGGTGCACAAGCGGCGCCGGGAGGGCGATGTGGAGAAGCTGTCCGATT
ACGTGGAGAACATAATGTCGGGATTCATAGAGTATAAACCCATCGCACGC
TGCCCTGGAAGTTTGAGTTCATCAACGAAGTCTACATATCCTGGCACTGG
CCTATTGCGACAAGTGGGCCGGGTGCAGCCAATGTCGACTTCTGCAGCCA
GAATCGACCATCTTTATACTTACTGCGACGAAAGCTGACGACTGAGCGTA
CAGTCCGGGGTTCCC
UFO05857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p-cup-RA | 1875 | CG12993-RA | 72..1189 | 7..1115 | 5100 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17447927..17448320 | 698..305 | 1925 | 99.2 | Minus |
| X | 23542271 | X | 17447281..17447626 | 1042..698 | 1510 | 97.7 | Minus |
| X | 23542271 | X | 17448405..17448703 | 305..7 | 1465 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:14:15 has no hits.
UFO05857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:34 Download gff for
UFO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12993-RA | 66..1189 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:49 Download gff for
UFO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p-cup-RA | 66..1189 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:51 Download gff for
UFO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p-cup-RA | 66..1189 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:51 Download gff for
UFO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17447200..17447625 | 699..1115 | 95 | <- | Minus |
| X | 17447927..17448319 | 306..698 | 99 | <- | Minus |
| X | 17448405..17448708 | 1..305 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:49 Download gff for
UFO05857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17341233..17341658 | 699..1115 | 95 | <- | Minus |
| arm_X | 17341960..17342352 | 306..698 | 99 | <- | Minus |
| arm_X | 17342438..17342741 | 1..305 | 98 | | Minus |
