UFO05859.5prime Sequence
1070 bp (977 high quality bases) assembled on 2009-07-20
> UFO05859.5prime
CAGTCGACATGGCCCAAGTTCCCTTGGCAATCGTCTCGCACAAGCGCCAG
GTGTGCAGCCTGTACAAGCGAGCACTGCGCAACTTAGAGTCGTGGTACGA
CCGACGCAATGTCTACCGCTACCGCGCTGTGCAGCTGCGTGCTCGCTTCG
ACGAAAACCGCTCCAAAGATCTGGGCGAGGGCATCCGCCTCCTAGCCTGT
GGACAAAGGGAGCTTTTCGAGACAAGGCATTTCCAGCCCCGAAACTTTGC
CAACAGTGCCGGTGGCTGTGCTTTCGAACGAGAGGTGATTCCGCCCGACT
GGGTCCTGGACTACTGGCATCCCCTGGAGAAGGCCCAGTACCCCGAGTAC
TTTGCCAAGCGGGAGCAGCGCAAGAAGGAGTTTGTGACCTGGTGGGAGAA
GCAGTACGGCAAGCCCGACCCCAAGGACCTGGGACACCACGCAAGCTTTC
TAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAAT
CATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACT
AGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTC
TGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGG
AGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAA
ACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTG
CGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATAT
TGGCCACGTTTAAATCAAACTGGTGAAACTCACCCAGGATTGCTGAGACG
AAAACATATTCTCAATAAACCCTTTAGGAATAGCAGTTTCACGTACACGC
CACATCTGCGAATATATGTGTAGAACTGCGAAATCGTCTGGTATCCACTC
CAGAGCGATGAAACGTTCAGTTGCTCATGAACGGTACAAGTTAACCCATC
ATATCCAGCCAACGCTCATG
UFO05859.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9306-RB | 687 | CG9306-RB | 172..603 | 9..440 | 2160 | 100 | Plus |
| CG9306-RA | 787 | CG9306-RA | 88..519 | 9..440 | 2160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13370371..13370564 | 440..247 | 970 | 100 | Minus |
| 2L | 23513712 | 2L | 13370624..13370764 | 246..106 | 705 | 100 | Minus |
| 2L | 23513712 | 2L | 13370842..13370939 | 106..9 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:13 has no hits.
UFO05859.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:15 Download gff for
UFO05859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9306-RA | 145..583 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:16 Download gff for
UFO05859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9306-RA | 88..526 | 9..448 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:27 Download gff for
UFO05859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9306-RA | 88..526 | 9..448 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:27 Download gff for
UFO05859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13370371..13370564 | 247..440 | 100 | <- | Minus |
| 2L | 13370624..13370763 | 107..246 | 100 | <- | Minus |
| 2L | 13370842..13370939 | 9..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:16 Download gff for
UFO05859.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13370371..13370564 | 247..440 | 100 | <- | Minus |
| arm_2L | 13370624..13370763 | 107..246 | 100 | <- | Minus |
| arm_2L | 13370842..13370939 | 9..106 | 100 | | Minus |
