UFO05863.5prime Sequence
1105 bp (1003 high quality bases) assembled on 2009-07-20
> UFO05863.5prime
CAGTCGACATGGAGTTCAAGCGGTGGCGAGAGTTCATCGTGCACGTCAAG
GAGCACCTGGAAGCAAATCCAAGCATGCAGCAAGAGCTCACTACTTCCGA
AGTCATTTCGTCAGCCAAATGCGAGGAGGAGGTCTCGCCAGCCAAGGTGT
TCATAGTGGAGGAGCCTCCGGAAAATTGCCTGGCTGAAGACATGTTCGTT
GACGTGCCACCTTCATCAGAGAACGACGAGAGCACCAGCCCGGTGGAGGA
GGAGGAGGAAGAAGACGACGAGGTGGACTCCTCCTCGATGACAGTTGACT
GCGAATTGGGCACCAGAAACTCCACACACTTTGCTCCTTTAACCAAATTC
AATCCTACGTTTTACCGACGCAGTCCTCGGATCACACAGTTCATTGAACT
GTATAAGCAGCAGACATGCCTCTGGGATCCAGCGGATGAGTCGTACAGGG
ACAAGGAGAAACGCGCAAATGCCTATGAGGAGTTGCTGGAGCAATTAAAG
GCGACCGTCAATCTTCACCTAACGGCCTATAAGCTGAAGAAGTGCATCAC
CAGCCTACACGCGCAGTATGCGTCGATCTCGCGGCAGAAGAAAACTCAGA
AACTAACCAAGGTTCCACTGTACTACCATGGAAAGTACAGCTTTCTGGCA
GAGCGCGGTAGTCTGGAGGATGCGGACAGCGATGATGTCGACGGCGATGG
CAAAATAAAGCTGGTGTTCACAGAGGAGAATCAACTGACCACACAGTTCA
TTGATTTGTACTCCAAGTTTCCCCAACTGTACGATCCCGCGCACAAGCAC
TTCTGCAATCTAAACGTACGAAAGTCATCGCTCATAGAGATCACTGACCT
GCTGACTTCGGAGTTTTCGTTGGGCCTGGTCACCCACTACGATGTCTACG
ACAGTATTCAGAGCATGCGCAATGTATTCGCGACGATCAAAACCCTCACA
GACGTCAATGTGTGGGTCTCTCGCTGGCGAGAAGCAGTACATCGAGCGCC
TGCATAGCTTTATGCCCACTAATCATCGACGAAGCTAATGTGAGTCTGCG
AGCACTCTAGCACAGAACAGCCTGCAGGCACTCAGTCAGATCATAAATGG
GCGAT
UFO05863.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| az2-RA | 2006 | CG1605-RA | 142..1260 | 9..1105 | 5005 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7511841..7512203 | 710..348 | 1815 | 100 | Minus |
| 2R | 25286936 | 2R | 7512270..7512608 | 347..9 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 7511468..7511786 | 1022..709 | 1290 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:53 has no hits.
UFO05863.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:31 Download gff for
UFO05863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 110..1196 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:40 Download gff for
UFO05863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 135..1221 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:35 Download gff for
UFO05863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| az2-RA | 135..1221 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:35 Download gff for
UFO05863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7512270..7512615 | 1..347 | 99 | | Minus |
| 2R | 7511407..7511784 | 711..1072 | 94 | <- | Minus |
| 2R | 7511841..7512203 | 348..710 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:40 Download gff for
UFO05863.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3398912..3399289 | 711..1072 | 94 | <- | Minus |
| arm_2R | 3399346..3399708 | 348..710 | 100 | <- | Minus |
| arm_2R | 3399775..3400120 | 1..347 | 99 | | Minus |
