UFO05866.5prime Sequence
1102 bp (1013 high quality bases) assembled on 2009-07-20
> UFO05866.5prime
CAGTCGACATGAACGGTGGTGGTGGAGGAAGTGGAGGAGCAAATGTGAGC
AATGGCTCCAGCACCAATGTAACAGCTGCCGGGAGCACTGGGGGCGGAAG
CGCAGGCGACGAGACTGGTGGAGATGCCAGCTCCAGACGCCAGGCGACTC
GGGTGTTTAAGAAGAGCTCCTCCAACGGCAAGATAACAGTTTACCTTGGC
AAACGGGACTTCGTCGACCATGTCACGCACGTGGATCCCATTGACGGTGT
TGTCTTCATTGATCCAGAGTACGTAAAGGACCGTAAGGTTTTTGGCCAGG
TGCTTGCCGCCTTTCGGTACGGACGTGAAGACCTAGATGTTTTGGGATTA
ACGTTCCGTAAGGACCTGTATCTGGCGCATGAGCAGATCTATCCGCCCAT
GCAGCTGGACCGCCCGATGACCCGGCTTCAGGAAAGGTTAATTAAAAAGC
TGGGGCCGAACGCCCATCCGTTTTATTTTGAGGTTCCGCCCTATTGCCCA
GCCTCTGTGTCCTTGCAGCCGGCTCCTGGAGATGTGGGCAAGTCTTGCGG
AGTAGACTACGAGCTGAAGGCCTTTGTGGGTGAGAACGTGGAGGACAAAC
CCCACAAGCGGAACTCGGTGCGACTAACTATTCGCAAAGTCATGTACGCA
CCATCCAAAGTCGGTGAGCAGCCATCGATCGAAGTAAGCAAGGAGTTTAT
GATGAAGCCAAACAAGATCCATTTGGAAGCTACTTTGGACAAGGAGTTAT
ACCACCACGGCGAAAAAATATCGGTCAACGTTCATGTGGCCAACAACTCA
AATCGGACGGTAAAAAAGATTAATGTATGTGTCCGGCAGTTTGCGGATAT
TTGTCTCTTTTCGACGGCGCAATATAAATCTGTAGTGGCAGAAATCGAGT
CAGAAGACGGATGTCAAGTGGCTCCGGATTTACACTCTCGAAGGTATTTG
AGTTGTGCCCCTATTGGCAATAATAAGGATAAATGGGGCTTGCTTTGGAC
GGGCAGCTAAAGCATGAAGACACCATTTGGCGTCTAGCACTCTCATTACA
TCCTGCTCAGCGTGGAGGTCTCGATATGTCCACTATAGGTCAGTAATGCT
GA
UFO05866.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krz-RB | 1988 | CG1487-RB | 155..1230 | 9..1077 | 5125 | 98.9 | Plus |
| krz-RA | 5281 | CG1487-RA | 155..1230 | 9..1077 | 5125 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32051264..32051839 | 584..9 | 2880 | 100 | Minus |
| 3R | 32079331 | 3R | 32049365..32049870 | 1077..579 | 2125 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:26 has no hits.
UFO05866.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:30 Download gff for
UFO05866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 147..1226 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:01 Download gff for
UFO05866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1230 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:40 Download gff for
UFO05866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krz-RA | 151..1230 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:40 Download gff for
UFO05866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32049365..32049869 | 580..1077 | 97 | <- | Minus |
| 3R | 32051269..32051843 | 1..579 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:01 Download gff for
UFO05866.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27875087..27875591 | 580..1077 | 97 | <- | Minus |
| arm_3R | 27876991..27877565 | 1..579 | 99 | | Minus |
