UFO05870.5prime Sequence
1076 bp (988 high quality bases) assembled on 2009-07-20
> UFO05870.5prime
CAGTCGACATGGCGACGAGAGGCAGTGGAACCCGTGTGCAATCGCAGCCA
AAGATTTTCCCATCGCTGCTTTCCAAGCTGCACGGCGCTATCTCGGAAGC
CTGCGTCTCGCAGCGTCTGTCCACCGACAAGAAGACGCTGGAGAAGACCT
GGAAGTTGATGGACAAGGTGGTCAAACTGTGCCAGCAGCCGAAGATGAAT
CTTAAGAATAGTCCACCGTTTATTTTGGACATCCTGCCGGATACGTACCA
GCGCCTGAGATTGATCTACTCAAAGAACGAGGACCAGATGCACCTGCTCC
ATGCCAACGAGCACTTCAACGTGTTCATCAACAACCTGATGCGAAAGTGC
AAGCAGGCCATCAAGTTGTTCAAGGAGGGCAAGGAGAAGATGTTCGACGA
GAACTCCCACTACCGCCGCAATCTCACCAAGCTCAGCCTGGTCTTCTCCC
ACATGCTCAGCGAACTGAAGGCCATATTCCCCAACGGTGTCTTTGCCGGG
GATCAATTTCGGATCACCAAAGCGGATGCGGCTGACTTTTGGAAGAGCAA
CTTCGGTAACAGCACATTGGTTCCCTGGAAAATCTTCCGGCAGGAGCTTA
ACAAAGTACATCCCATAATCTCCGGCCTGGAGGCCATGGCCCTAAAGACC
ACTATCGATCTTACCTGCAACGACTTCATTTCCAACTTCGAGTTCGACGT
CTTCACACGCCTCTTCCAGCCTTGGGTGACCCTGCTACGCAACTGGCAGA
TTCTGGCCGTCACACATCCGGGCTACGTGGCGTTTCTCACATACGACGAG
GTGAAAGGCTCGCCTACAGCGCTACATCCTCAAGGCGGGCAGCTACGTTT
TCCGGCTCTCCTGCACGCGATTGGGCCAATGGGCCATCGGCTACGTACTG
CCGAGGGAGAGATTCTGCAGACATCCCTCAGACAGTCGCTGTGCAGGCGC
TGCTCGATGGCATCGAGAGGGCTCTACTGTACCCAGATGGCAGCGTACAT
CGATCTGTCGTCTGCGTCAAAGTTCCCGAAGACACATACGTACCCAAGCA
ATCGAACTATCTGTGATTGGGCAACT
UFO05870.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbl-RB | 4902 | CG7037-RB | 356..1437 | 9..1066 | 4775 | 97.4 | Plus |
| Cbl-RA | 2948 | CG7037-RA | 356..1437 | 9..1066 | 4775 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8425309..8425862 | 9..562 | 2770 | 100 | Plus |
| 3L | 28110227 | 3L | 8426403..8426808 | 560..961 | 1755 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:17 has no hits.
UFO05870.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:33 Download gff for
UFO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbl-RB | 358..1401 | 2..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:54 Download gff for
UFO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbl-RA | 349..1392 | 2..1032 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:46 Download gff for
UFO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbl-RA | 349..1392 | 2..1032 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:46 Download gff for
UFO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8425302..8425862 | 2..562 | 99 | -> | Plus |
| 3L | 8426406..8426813 | 563..965 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:54 Download gff for
UFO05870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8418402..8418962 | 2..562 | 99 | -> | Plus |
| arm_3L | 8419506..8419913 | 563..965 | 98 | -> | Plus |
