UFO05872.5prime Sequence
1099 bp (995 high quality bases) assembled on 2009-07-20
> UFO05872.5prime
CAGTCGACATGGAAGTCGACGAGGATGGATACGAGGTTCCCTCCAGCAGC
AGCAAGGGCGATAAGAAGCGCTTTGAGGTGAAGAAGTGGAACGCCGTGGC
TCTGTGGGCCTGGGACATCGTGGTGGACAACTGCGCCATCTGCCGCAACC
ACATCATGGACTTGTGCATCGAGTGTCAGGCGAACCAGGCGTCCGCCACT
AGCGAGGAGTGCACCGTGGCCTGGGGCGTCTGCAACCACGCCTTCCATTT
CCACTGCATCTCTCGCTGGCTAAAGACGCGCCAGGTATGCCCACTGGACA
ACCGCGAGTGGGATTTCCAGAAGTACGGCCACAAAAAGCTTTCTAGACCA
TTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATC
ATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTT
GGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAA
ATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAA
GCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTG
TTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAA
CACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTG
ATATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATGAAAACGGT
GTAACAAGGTGAACACTATCCATATCACAGCTCACGTCTTTCATGCAATA
CGAAATAGATGACATCATCAGGCGGCAAGAATGTGAATAAGGCGGTAAAC
TTGTGCTAATTTTTCTTACGTCTTAAAGCCGTATATATCACTAACGCTG
UFO05872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc1a-RD | 1145 | CG16982-RD | 144..473 | 8..337 | 1635 | 99.7 | Plus |
| Roc1a-RA | 696 | CG16982-RA | 144..473 | 8..337 | 1635 | 99.7 | Plus |
| Roc1a-RC | 1229 | CG16982-RC | 305..557 | 85..337 | 1250 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 647702..647925 | 114..337 | 1105 | 99.6 | Plus |
| 3L | 28110227 | 3L | 358134..358394 | 67..330 | 430 | 78.4 | Plus |
| X | 23542271 | X | 647447..647525 | 8..86 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:47 has no hits.
UFO05872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:33 Download gff for
UFO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1a-RA | 158..493 | 1..340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:36 Download gff for
UFO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1a-RA | 141..476 | 1..340 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:04 Download gff for
UFO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc1a-RA | 141..476 | 1..340 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:04 Download gff for
UFO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 647444..647525 | 1..86 | 95 | -> | Plus |
| X | 647610..647637 | 87..114 | 100 | -> | Plus |
| X | 647703..647920 | 115..332 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:36 Download gff for
UFO05872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 541477..541558 | 1..86 | 95 | -> | Plus |
| arm_X | 541643..541670 | 87..114 | 100 | -> | Plus |
| arm_X | 541736..541953 | 115..332 | 100 | == | Plus |
