UFO05873.5prime Sequence
1048 bp (945 high quality bases) assembled on 2009-07-20
> UFO05873.5prime
CAGTCGACATGCATTGGATTAAATGTTTATTAACAGCATTCATTTGCTTC
ACAGTCATCGTGCAGGTTCACAGTTCCGGCAGCTTTGAGTTGCGCCTGAA
GTACTTCAGCAACGATCACGGGCGGGACAACGAGGGTCGCTGCTGCAGCG
GGGAGTCGGACGGAGCGACGGGCAAGTGCCTGGGCAGCTGCAAGACGCGG
TTTCGCGTCTGCCTAAAGCACTACCAGGCCACCATCGACACCACCTCCCA
GTGCACCTACGGGGACGTGATCACGCCCATTCTCGGCGAGAACTCGGTCA
ATCTGACCGACGCCCAGCGCTTCCAGAACAAGGGCTTCACGAATCCCATC
CAGTTCCCCTTCTCGTTCTCATGGCCGGGTACCTTCTCGCTGATCGTCGA
GGCCTGGCATGATACGAACAACAGCGGCAATGCGCGCACCAACAAGCTCC
TCATCCAGCGACTCTTGGTGCAGCAGGTACTGGAAGTGTCCTCCGAATGG
AAGACGAACAAGTCGGAATCGCAGTACACGTCGCTGGAGTACGATTTCCG
TGTCACCTGCGATCTCAACTACTACGGATCCGGCTGTGCCAAGTTCTGCC
GGCCCCGCGACGATTCATTTGGACACTCGACTTGCTCGGAGACGGGCGAA
ATTATCTGTTTGACCGGATGGCAGGGCGATTACTGTCACATACCCAAATG
CGCCAAAGGCTGTGAACATGGACATTGCGACAAGCCCAATCAATGCGTTT
GCCAACTGGGCTGGAAAGGAGCCTTGTGCAACGAGTGCGTTCTGGAACCG
AACTGCATCCATGGCACCTGCAACAACCCTGCACTTGCATCTGCAACGAG
GGTTGGGGAGGCTTGTACTGCACCAGGATCTGACTACTGCACCACACAGA
CCTGCAGATGGCGGACTGCTTCACACGGCGAGGGATGTACACATGCAAAT
GCGCTCAGATACAGTGGTGATGATGCGAAATGAGATCTTACTCTGCAATG
CGATGTCCATCCTGCGATTGTGTACTGCATCGATGAGCGCACACAAAA
UFO05873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dl-RC | 4581 | CG3619-RC | 678..1744 | 7..1048 | 4620 | 97 | Plus |
| Dl-RB | 3546 | CG3619-RB | 678..1744 | 7..1048 | 4620 | 97 | Plus |
| Dl-RA | 5278 | CG3619-RA | 678..1744 | 7..1048 | 4620 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19319817..19320134 | 378..61 | 1590 | 100 | Minus |
| 3R | 32079331 | 3R | 19311816..19312064 | 693..445 | 1245 | 100 | Minus |
| 3R | 32079331 | 3R | 19306441..19306589 | 894..749 | 565 | 96.6 | Minus |
| 3R | 32079331 | 3R | 19316006..19316073 | 444..377 | 340 | 100 | Minus |
| 3R | 32079331 | 3R | 19325480..19325540 | 67..7 | 305 | 100 | Minus |
| 3R | 32079331 | 3R | 19308707..19308761 | 748..694 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:15 has no hits.
UFO05873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:27 Download gff for
UFO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RB | 668..1736 | 1..1044 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:52 Download gff for
UFO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RA | 672..1740 | 1..1044 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:45 Download gff for
UFO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dl-RA | 672..1740 | 1..1044 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:45 Download gff for
UFO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19308707..19308761 | 694..748 | 100 | <- | Minus |
| 3R | 19311816..19312064 | 445..693 | 100 | <- | Minus |
| 3R | 19316006..19316072 | 378..444 | 100 | <- | Minus |
| 3R | 19319818..19320129 | 66..377 | 100 | <- | Minus |
| 3R | 19325482..19325546 | 1..65 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:52 Download gff for
UFO05873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15134429..15134483 | 694..748 | 100 | <- | Minus |
| arm_3R | 15137538..15137786 | 445..693 | 100 | <- | Minus |
| arm_3R | 15141728..15141794 | 378..444 | 100 | <- | Minus |
| arm_3R | 15145540..15145851 | 66..377 | 100 | <- | Minus |
| arm_3R | 15151204..15151268 | 1..65 | 95 | | Minus |
