UFO05874.5prime Sequence
1095 bp (995 high quality bases) assembled on 2009-07-20
> UFO05874.5prime
CAGTCGACATGGGTGGCAATAGCACAGGAGCGAATACGAGCGCCTTCAGC
GCTGGCGGTTACATTGGGCCCACGTCGGCCAGCAGTCATCACAGCCTGGG
AACTTCATCGGCGGCAGCGGCAGCAGCAGCAGGAAGTGACCTGATACCCG
CACCAATTGGCACGGGCAACGCCATGGGAGTGTCTTCGTATGCATACGGT
GGAACCAGTTGGGAGGAGTTCTGCGAACGACACGCCAGAGTGGCTGCCTC
GGATTTCGCCAAGGCGTGCATCACGTACATTAATGGCAATCTGCCGCCGG
AGGAGGCGAGGAACATCCAGCATCGCAGCTTTGCTCAGAAATTTGTGGAA
TCCTTTTCGGCGCACTACGACACGGAGTTCTTCAAGCGGAGGAGCACTCT
TAAATCAGGTGCGGGCTCGCTGGACTTCGAGGAGGAGCACGAGGTGCCAA
AACTGCTCTCAAAGTCTCTATTAAGACGACTATCATTCAAAGGACTGCGC
AAGGGCAAGGCCTTCTTCCACAAGAACTCGGATGACTTGGATGGCAGCGG
TGGCAGCGGCAAGCAGAGCAAGACGAAGCTGGCCAAGATCGTTGTGGAGT
GCCGGAAGGAGGGCACAGTGAACAACCTGACGCCGGAAAGTCTGGATCAA
CCGACGGGCTCCCAAAAGTGGGAGAAGTGTCGACTTGTACTGGTCAAGGC
CGTGGGTGGCTACATGCTAGAGTTTTACACGCCGCACAAGGCGACTAAGC
CGCGCAGTGGAGTCTTTTGTTTCCTCATCTCGGAGGCTCGCGAAACAACG
GCACTTGAGATGCCGGACAGGCTGAACACATTCGTCCTCAAGGCAGACAC
AACATGGAGTATGTGATTGAGCGGAGAGCGCGGAGGAGATGCGGAGTTGG
CTAGCCACAATACGGTACTGCATGCGAACGCCACCCACTCAGCAGCCAAC
GATCGAGTCGGATGGTGTTATGGCGTCCGCCATGCAACATCGCCGACACT
CCGAGTCCAATCCATTGGGTGGGATTCAGATCGCAGTACACCACAGCCGT
CGATGCAACATCTCTTGTTAGAAATAAAAAACCCCCCCCCCCTCT
UFO05874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lnk-RF | 2951 | CG17367-RF | 279..1316 | 9..1039 | 4970 | 99.1 | Plus |
| Lnk-RA | 3113 | CG17367-RA | 474..1511 | 9..1039 | 4970 | 99.1 | Plus |
| Lnk-RB | 2918 | CG17367-RB | 279..1316 | 9..1039 | 4970 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25889778..25890279 | 9..510 | 2510 | 100 | Plus |
| 3R | 32079331 | 3R | 25890716..25891243 | 508..1030 | 2345 | 98.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 131..202 | 70..138 | 118 | 66.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9161..9232 | 70..138 | 118 | 66.7 | Plus |
UFO05874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:26 Download gff for
UFO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RA | 391..1443 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:48 Download gff for
UFO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RB | 271..1323 | 1..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:10 Download gff for
UFO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lnk-RB | 271..1323 | 1..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:10 Download gff for
UFO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25889770..25890278 | 1..509 | 99 | -> | Plus |
| 3R | 25890718..25891261 | 510..1047 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:48 Download gff for
UFO05874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21715492..21716000 | 1..509 | 99 | -> | Plus |
| arm_3R | 21716440..21716983 | 510..1047 | 97 | | Plus |
