UFO05875.5prime Sequence
1094 bp (985 high quality bases) assembled on 2009-07-20
> UFO05875.5prime
CAGTCGACATGTTGAAGAACAAGTCCATGAAAACCTCAAAGTTATATGTT
ATTAAGAGAGATGGCAGGCAGGAGGAGGTGCACTTCGATAAAATAACCTC
AAGAATCCAGAAGCTTTGCTACAACTTGAACATGGATTTTGTTGATCCTG
TTACTATCACCCTGCAAGTCATCAATGGTCTGTACTGCGGCGTGACCACC
CAGGAGCTGGACAACTTGGCAGCAGAAATCGCAGCTGGATTAACATGCAA
TCATCCCGACTACGCCATCCTGGCTGCTCGCATTGCAGTGTCCAATTTGC
ACAAGGAAACCAAGAAGGCTTTTTCTGACGTCTTCGAGGATCTGTATAAT
CATGTAAACAAGGAGACGAATCAAAAAGTGCCCTTGGTATCCGAGTTTCA
CTACAATGTGGTTAAGAAGAACGCCACACGGCTGAACTCGTCCATAATCT
ATGATCGTGACTTTGGCTATAACTATTTTGGCTTCAAGACCCTGGAGCGT
TCCTATCTGCTCAAAAGAAACGGAAAGATCGCAGAGCGACCGCAGCATAT
GCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGATGCGGCCG
TGGAAACTTATAATCTTCTATCGGAGCGCTACTTCACGCATGCATCGCCC
ACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCT
TCTGACCATGACAGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAGC
AGTGCGCCATGATCTCCAAGTCCGCCGGTGGCATTGGACTTAACGTACAC
TGCATTCGTGCAAAGGGCACATCGATTTGCGGCACAAATGGAACTTCGAA
TGGGTTGGTTCCAATGCTGAGGGTTTTCAATAATGTGGCACGTTATGTGG
ATCAGGAGGCGGCAAGCGTCCCGGTGCCTTTGTCATTTACCTGGACCCTG
GCACTCGGATGTCTTTGAGTTCTGGACTGAAGAAGAACACAGCAGGAAGA
AATCGCCCCACGCGATCTGTTTTTACGCCCCTGGTGGATACCCGATCTCT
CTTATGAAAGCATGGAGCCAACGGGATGATCGCTCATGTGCCCC
UFO05875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrL-RA | 2577 | CG5371-RA | 58..1157 | 1..1094 | 5005 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10326550..10327219 | 992..327 | 3140 | 99 | Minus |
| 2L | 23513712 | 2L | 10327277..10327454 | 327..150 | 890 | 100 | Minus |
| 2L | 23513712 | 2L | 10327685..10327777 | 151..59 | 465 | 100 | Minus |
| 2L | 23513712 | 2L | 10327823..10327886 | 64..1 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:32 has no hits.
UFO05875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:25 Download gff for
UFO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 101..1200 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:37 Download gff for
UFO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 58..1157 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:57 Download gff for
UFO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrL-RA | 58..1157 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:57 Download gff for
UFO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10327827..10327886 | 1..60 | 96 | | Minus |
| 2L | 10326446..10327218 | 328..1094 | 97 | <- | Minus |
| 2L | 10327277..10327454 | 150..327 | 100 | <- | Minus |
| 2L | 10327687..10327775 | 61..149 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:37 Download gff for
UFO05875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10326446..10327218 | 328..1094 | 97 | <- | Minus |
| arm_2L | 10327277..10327454 | 150..327 | 100 | <- | Minus |
| arm_2L | 10327687..10327775 | 61..149 | 100 | <- | Minus |
| arm_2L | 10327827..10327886 | 1..60 | 96 | | Minus |
