UFO05876.5prime Sequence
1089 bp (977 high quality bases) assembled on 2009-07-20
> UFO05876.5prime
CAGTCGACATGTCGCATCACTACGTGGTGACGGCGCAAAAGCCGACGGCC
GTTGTTGCCTGCCTAACAGGCAACTTCACCTCGCCCACGGATCTCAATTT
GATCATTGCCCGGAACAATCAGGTGGAAATCGATCTGGTCACGCCGGAGG
GACTGCGCCCCCTAAAAGAGATCAACATAAATGGCACCATTGCCGTGATG
CGCCACTTCCGACCGCCCGACAGCAACAAGGATTTGCTCTTCATACTGAC
GCGTCGTTACAACGTCATGATCCTCGAGGCCCGTATGGTCAACGACGTCA
TCACGGTGGTGACCAAGGCCAATGGTAATGTTTCCGACTCGGTGGGCATC
CCCTCCGAAGGAGGAGTTATTGCGGCCATCGATCCCAAGGCTAGGGTCAT
CGGAATGTGCCTTTACCAGGGGCTGTTCACCATCATTCCGATGGACAAGG
ATGCTAGCGAGCTGAAAGCCACAAATCTTAGAATGGATGAGCTAAACGTG
TACGATGTTGAGTTTCTGCACGGCTGCTTGAATCCCACAGTTATCGTGAT
CCACAAGGACAGCGATGGCCGGCACGTAAAGTCGCACGAGATTAATCTGC
GGGATAAGGAGTTTATGAAAATCGCATGGAAGCAGGACAACGTGGAAACA
GAGGCCACAATGCTGATCCCGGTGCCGTCGCCCATCGGTGGTGTTATCGT
CATTGGTCGGGAATCGATTGTATACCATGACGGAAGCAACTATCACGCTG
TGGCGCCGCTCACTTTTCGCCAAAGCACCATCAACTGTTACGCCCGTGTG
AGTAGCAATGGATTGCGCTATCTGCTGGGTAACATGGATGGTCAGCTGTA
TATGCTGTTCCTTGGGACCGCCGAAACTAGCAGGGAGTGACTGTGAGGAC
ATAAAAGTGAGCACTAGGCGAGATCTCTATACCAGAGTGCATACATACTA
GACATGTTTCTTACATGGAGCACGTCATGAGACCCCGCAGTGGTGGGCTG
ATCGAGCATCGACGGTCAATTGTCTGCCTGTAAGAATCACATCTAGTCCA
TCCGACTGGCTTGGGTCGATAGATCGCCAAGACAGGCAT
UFO05876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pic-RA | 3881 | CG7769-RA | 164..1167 | 8..999 | 4655 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13053235..13053701 | 480..942 | 2135 | 99.1 | Plus |
| 3R | 32079331 | 3R | 13052620..13053034 | 67..481 | 2075 | 100 | Plus |
| 3R | 32079331 | 3R | 13052408..13052470 | 8..70 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:03:59 has no hits.
UFO05876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:24 Download gff for
UFO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DDB1-RA | 149..1156 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:19 Download gff for
UFO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..1167 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:28 Download gff for
UFO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pic-RA | 160..1167 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:28 Download gff for
UFO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13052404..13052469 | 1..69 | 95 | -> | Plus |
| 3R | 13052623..13053034 | 70..481 | 100 | -> | Plus |
| 3R | 13053237..13053766 | 482..999 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:19 Download gff for
UFO05876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8878126..8878191 | 1..69 | 95 | -> | Plus |
| arm_3R | 8878345..8878756 | 70..481 | 100 | -> | Plus |
| arm_3R | 8878959..8879488 | 482..999 | 96 | | Plus |
