Clone UFO05877 Report

Search the DGRC for UFO05877

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:58
Well:77
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptTER94-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05877.5prime Sequence

478 bp (362 high quality bases) assembled on 2009-07-20

> UFO05877.5prime
CAGTCGACATGGCAGATTCCAAGGGTGAAGATCTGGCTACGGCGATCCTG
AAGCGCAAGGACCGTCCCAACCGACTGATTGTGGAAGAGGCGCAGAATGA
CGACAACTCTGTGGTGTCGCTATCGCAGGCGAAGATGGATGAGCTGCAGC
TCTTCCGTGGCGACACCGTGATTCTGAAGGGTAAGCGCCGAAAGGAGACG
GTGTGCATCGTGCTCTCGGACGACACCTGTCCCGACGAGAAGATCCGCAT
GAACCGGGGTGGGGCGCAACAACCTGGGCGTCCATCTTTCAGATGTGGTT
TCCGTGCAGTCCCTGCCCGGACGTCAAAGTACGGCAAACGGGGTGCCCAT
CCTGCCCATCGACGAAAGCCACGGAAGCCCTTTACCGGGCACCCCGTTTC
AGAAATCTTTTTCTGAAGCGCTTAATTTCTTAAAGGCCCATCGGCCCATC
CCCCCTGGGGGAGAAATATTTTTTTGGG

UFO05877.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RA 3016 CG2331-RA 128..485 8..369 1635 97.5 Plus
TER94-RE 3055 CG2331-RE 183..527 21..369 1555 97.1 Plus
TER94-RC 3058 CG2331-RC 183..527 21..369 1555 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9990657..9990896 126..369 945 96.3 Plus
2R 25286936 2R 9990470..9990574 25..129 525 100 Plus
Blast to na_te.dros performed on 2014-11-28 23:05:08 has no hits.

UFO05877.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:24 Download gff for UFO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 117..500 1..388 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:07 Download gff for UFO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 119..502 1..388 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:09 Download gff for UFO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 119..502 1..388 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:09 Download gff for UFO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9990471..9990573 26..128 100 -> Plus
2R 9990660..9990913 129..388 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:07 Download gff for UFO05877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5877976..5878078 26..128 100 -> Plus
arm_2R 5878165..5878418 129..388 94   Plus