UFO05880.5prime Sequence
1103 bp (982 high quality bases) assembled on 2009-07-20
> UFO05880.5prime
CAGTCGACATGTTTACGCCCAGGCAGAAAGGATACGGGAATGGCTTCATT
CACTCGCCACAAACACCTCTCAGCTTCAGCCGGGAACTGCGGCAGGTGCT
GCAGGAGCGGAATCTTCTAACTGCCAAGTCGCGTAGGAAAGTTTGCTCCA
TGCTGGACAGCAACAACAGCAGTCCGATTGGCTCCCCCAATCCGGACGCG
GGAAAAAGATTGGGTTTCCGTCGCCAGGCCATCCAGGAGATTATTTCGTC
GGAGAAATCGTATCTGGAGCAGCTGGAGCTGCTGATGAACTTTTTTGTGC
GTCCCTTGAAGGAACAGGCTATCATCGATTGCTCCAATCACACGCTGCTC
TTCGGTCAAATCGAGATGATTCACAATCTTAACGGAGAATTCCTGCGCGA
ACTGGAGGCGAACATGGAGAATGTTGCGCACGCATTCCTGAAAATGGCTC
CTTTCTTCAAACTGTACTCGGTGTACGCCTTTGACTACCGCGGAGCTCTG
TTCATCATCCAGGATTTGATCAGCAAGAATCCGGTGTTCCGAAAGTTTCT
GGAGCAGACCGAGAGTCGTCCGGAGGTGCAACGCAAGCTAAATTCGCTGA
TGATTGTGCCCATCCAGCGGGTACCGCGGTATAAGCTTCTTCTGGAGCAG
GTACTGCTCTACACGAGTCCCGCAGATGCTGACTATAAGTTGTTGAAAGA
ATCCGTCAAGGAGATCGAGGCCACCGCCAGTCACATAAACACCTGTGTGG
AGGAGCAGGAAATTACCCAGTATCTGATTCATTTGCAGAACTCTTTGGTG
AATCGCACACCGAACATTGTGAAGCCCTCGCGACGGGTAATCAAAGAGGG
TGTACTGCAGAAGATCACTCACAAGGGCACGGAAATCAAGCGCTACTGTG
TTCTCATGTCCGACATCTTCATGTACTGCAGATGATCAAGGAACGTGCGC
CCCACACGTGTGGAAACTCACTGGGAGTGTTGGCTGTATTTTTTCGTTGA
AAAATGCAAGTGTACGAAATGCTGCCGGGCAACTTAGCTTACTTGCCAAT
GATGCATAATCTCGGTGACGCGATGTGCCTGTCCGCACTGGGTGGGCTTC
TAT
UFO05880.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF4-RA | 2132 | CG8606-RA | 102..1208 | 9..1100 | 5025 | 97.8 | Plus |
| RhoGEF4-RB | 1933 | CG8606-RB | 34..1009 | 140..1100 | 4370 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7322555..7323114 | 699..140 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 7322142..7322499 | 1049..698 | 1310 | 96.1 | Minus |
| 3L | 28110227 | 3L | 7323178..7323310 | 141..9 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:38 has no hits.
UFO05880.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:03 Download gff for
UFO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 100..1208 | 9..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:29 Download gff for
UFO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..1210 | 9..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:00 Download gff for
UFO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF4-RA | 102..1210 | 9..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:00 Download gff for
UFO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7322080..7322497 | 700..1103 | 94 | <- | Minus |
| 3L | 7322555..7323112 | 142..699 | 100 | <- | Minus |
| 3L | 7323178..7323310 | 9..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:29 Download gff for
UFO05880.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7315180..7315597 | 700..1103 | 94 | <- | Minus |
| arm_3L | 7315655..7316212 | 142..699 | 100 | <- | Minus |
| arm_3L | 7316278..7316410 | 9..141 | 100 | | Minus |
