UFO05882.5prime Sequence
1068 bp (943 high quality bases) assembled on 2009-07-20
> UFO05882.5prime
CAGTCGACATGGCTCTGTCCATCTTCTCCCTGGTCACTGGTCTTTATGTC
CTGCACTTCTCCATAGCTCTGATCCTGGTCAACAAAGAGGTGCCCCAAAC
GCGCGGAATGCTGTACCCCAGGGAATCGGAGACGCGGGAGGTGCGATCTC
TGGACGGGATCTGGAACTTTGTGCGCTCCGACCAGGCGAATCCCACGCAG
GGCGTCCGGGATGAGTGGTATGCCAAGGAGTTGAGCAAGAGCAGGCCCAC
AATACCCATGCCGGTGCCGGCATCCTATAATGACATAACCACGGACAATT
TGAGGGATCACGTGGGCACAGTGTGGTACGACCGCAAGTTCTTTGTGCCC
CGATCGTGGTCAAAGGATCAGAGGATATGGCTGCGATTCGGCAGTGTTCA
CTATGAGGCATATGTGTGGATCAACGGCCAGAAGGTGGTGAAGCATGAAA
TGGGTCACCTACCCTTCGAGGCGGAGGTCACCGATCTTCTGAGCTATGGA
GCCGAGAATCGGATCACCGTTATGTGCGACAATGCTCTGATTCAGACAAC
TGTGCCGCAGGGCAGGATTACGGAAGTGCCCAACGATGGTGGCATGACCA
TTGTGCAGAGCTACACCTTTGACTTCTTTAACTATGCGGGAATCCACAGG
AGCGTGCATCTTTACACCACGCCCCGTACTTTTATCGAGGAGGTTGAGGT
CACCACAAACCTTTCAAAGGATGCCACCGTTGGCGAAGTGTTCTATAGCG
TAAGCGTGAATGGCAGCGCTGCCAACGAGGCAGATAATGTCTTGCAAATC
CAGGCCAATTTGTACGATAAGGATGGCATATTGGTGGCGAATGCCACGTC
GGACCAAAAACTTGGTCGGCAAGCTGCAAGTGAACCCGGTGAGCCTGTGC
CTACTATGCATCGACGGTACTGTACAGCTGAATCATGCTGCACACGATAC
TCTGATGCTACGACTGAATGGATACCCACTAGTGACGCAGCAGTCTGATC
ACGCAGCGTTACTTCTGTGACACGAATCGATTCAGGTAGCCGGCATGCTG
TGGCGATCACTGTCATGA
UFO05882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15117-RA | 2487 | CG15117-RA | 301..1183 | 9..892 | 4395 | 99.9 | Plus |
| CG15117-RC | 2211 | CG15117-RC | 20..907 | 4..892 | 4390 | 99.7 | Plus |
| CG15117-RB | 2338 | CG15117-RB | 154..1034 | 11..892 | 4385 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19124537..19124941 | 416..12 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 19124105..19124418 | 729..416 | 1570 | 100 | Minus |
| 2R | 25286936 | 2R | 19123875..19124037 | 892..729 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:41 has no hits.
UFO05882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:28 Download gff for
UFO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 233..1141 | 1..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:04 Download gff for
UFO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 292..1200 | 1..904 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:07 Download gff for
UFO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15117-RA | 292..1200 | 1..904 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:07 Download gff for
UFO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19123875..19124036 | 730..892 | 99 | <- | Minus |
| 2R | 19124105..19124417 | 417..729 | 100 | <- | Minus |
| 2R | 19124537..19124946 | 4..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:04 Download gff for
UFO05882.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15011380..15011541 | 730..892 | 99 | <- | Minus |
| arm_2R | 15011610..15011922 | 417..729 | 100 | <- | Minus |
| arm_2R | 15012042..15012451 | 4..416 | 99 | | Minus |
