UFO05886.5prime Sequence
1039 bp (758 high quality bases) assembled on 2009-07-20
> UFO05886.5prime
CAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACGCAACGGCG
GCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCCGCAACTCT
AGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGCCGTGCCGT
ACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGACGCAGGGA
CTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCGCTGATGCG
GAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCAGCCGGCTC
CAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAG
GATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGA
GGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGG
TTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTAT
GCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTAC
GCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCG
AGACTATTCCATTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATG
CATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGAT
GTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTTCTGTGCGC
CAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGGTGGGCGTGC
CCAAGTCGATCTTCCCGGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAA
CTATACCCTGTACCACCCTGAAGAACATTCCACAGCAGGGCCACCCATCC
ACTACATGCGCTCCAGACAGATGTTCCACTCCACGCTGCTCAGGGCCCCG
GCACTGTTTCATCGATGTCCGACAACGATCCGATCGGTCCGCCGTCCTCC
AACCAGTCCGTTTCGCGAGGACTGGGAACGTCCGAACAT
UFO05886.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)k09913-RE | 1590 | CG3082-RE | 101..1122 | 9..1039 | 4735 | 97.9 | Plus |
l(2)k09913-RC | 1944 | CG3082-RC | 455..1476 | 9..1039 | 4735 | 97.9 | Plus |
l(2)k09913-RA | 1881 | CG3082-RA | 392..1413 | 9..1039 | 4735 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23070961..23071407 | 584..1039 | 1635 | 95.2 | Plus |
2R | 25286936 | 2R | 23070607..23070900 | 306..599 | 1425 | 99 | Plus |
2R | 25286936 | 2R | 23067946..23068128 | 123..305 | 915 | 100 | Plus |
2R | 25286936 | 2R | 23067727..23067841 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 407..464 | 110 | 65.5 | Plus |
UFO05886.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:00 Download gff for
UFO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RC | 467..1495 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:57 Download gff for
UFO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1413 | 1..1039 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:18 Download gff for
UFO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)k09913-RA | 385..1413 | 1..1039 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:18 Download gff for
UFO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23067720..23067841 | 1..123 | 97 | -> | Plus |
2R | 23067947..23068128 | 124..305 | 100 | -> | Plus |
2R | 23070607..23070888 | 306..587 | 100 | -> | Plus |
2R | 23070965..23071407 | 588..1039 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:57 Download gff for
UFO05886.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18955243..18955364 | 1..123 | 97 | -> | Plus |
arm_2R | 18955470..18955651 | 124..305 | 100 | -> | Plus |
arm_2R | 18958130..18958411 | 306..587 | 100 | -> | Plus |
arm_2R | 18958488..18958930 | 588..1039 | 95 | | Plus |