Clone UFO05886 Report

Search the DGRC for UFO05886

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:58
Well:86
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcriptl(2)k09913-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO05886.5prime Sequence

1039 bp (758 high quality bases) assembled on 2009-07-20

> UFO05886.5prime
CAGTCGACATGGCTGCGCACTTTTTTCGCACTGCATTTTACGCAACGGCG
GCCAGAAAATCGATGAGTCTGCCCTTCGCCGGCCGGACAGCCGCAACTCT
AGCCGTGGGCCTATCATTCGGTGCGCAAAATAGCCGGGCAGCCGTGCCGT
ACGAGAATGCCTACGCGGACAGCTTCTTCGGGGGCTGCCAGACGCAGGGA
CTGCTCCAGCGGATTCCCCAGACCGGATACATCCAGCCCCCGCTGATGCG
GAACTTCTCGAGCCTGCAGACGGGCCACCAGCAGCAGCAGCAGCCGGCTC
CAAATAGTGCCATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAG
GATATTACCAAGAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGA
GGTGGATCCCAAGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGG
TTCTCATGATGGCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTAT
GCCCAGATCTACACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTAC
GCCGTGGCAGCTACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCG
AGACTATTCCATTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATG
CATGGCTTCTCCGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGAT
GTCGCGCGACATGGATCGCTATGGTAGCATTCTGGACCGCTTCTGTGCGC
CAGGTGTGGGACAGCGCCGCCGACATCACCGAGATCCCGGGTGGGCGTGC
CCAAGTCGATCTTCCCGGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAA
CTATACCCTGTACCACCCTGAAGAACATTCCACAGCAGGGCCACCCATCC
ACTACATGCGCTCCAGACAGATGTTCCACTCCACGCTGCTCAGGGCCCCG
GCACTGTTTCATCGATGTCCGACAACGATCCGATCGGTCCGCCGTCCTCC
AACCAGTCCGTTTCGCGAGGACTGGGAACGTCCGAACAT

UFO05886.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k09913-RE 1590 CG3082-RE 101..1122 9..1039 4735 97.9 Plus
l(2)k09913-RC 1944 CG3082-RC 455..1476 9..1039 4735 97.9 Plus
l(2)k09913-RA 1881 CG3082-RA 392..1413 9..1039 4735 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23070961..23071407 584..1039 1635 95.2 Plus
2R 25286936 2R 23070607..23070900 306..599 1425 99 Plus
2R 25286936 2R 23067946..23068128 123..305 915 100 Plus
2R 25286936 2R 23067727..23067841 9..123 575 100 Plus
Blast to na_te.dros performed 2014-11-28 22:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2673..2730 407..464 110 65.5 Plus

UFO05886.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:00 Download gff for UFO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RC 467..1495 1..1039 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:57 Download gff for UFO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1413 1..1039 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:18 Download gff for UFO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)k09913-RA 385..1413 1..1039 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:18 Download gff for UFO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23067720..23067841 1..123 97 -> Plus
2R 23067947..23068128 124..305 100 -> Plus
2R 23070607..23070888 306..587 100 -> Plus
2R 23070965..23071407 588..1039 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:57 Download gff for UFO05886.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18955243..18955364 1..123 97 -> Plus
arm_2R 18955470..18955651 124..305 100 -> Plus
arm_2R 18958130..18958411 306..587 100 -> Plus
arm_2R 18958488..18958930 588..1039 95   Plus