UFO05887.5prime Sequence
1143 bp (1006 high quality bases) assembled on 2009-07-20
> UFO05887.5prime
CAGTCGACATGGACATATCTGGTGGGAATACGTCGCGCCAGCCCCAAAAG
AAGTCCAACCAAAACATCCAGGTGTATGTGCGCGTCAGACCCCTTAATTC
TCGGGAACGTTGCATCCGCTCGGCCGAAGTCGTGGATGTGGTCGGACCAC
GGGAAGTGGTCACCCGCCACACGCTGGACTCCAAGCTCACCAAGAAGTTC
ACCTTTGACCGCAGTTTTGGCCCCGAGTCCAAGCAGTGCGATGTCTACTC
CGTCGTGGTGTCTCCGCTGATCGAGGAGGTCCTCAATGGCTATAACTGCA
CGGTGTTTGCTTATGGCCAGACGGGCACAGGGAAGACCCACACCATGGTG
GGCAACGAGACTGCCGAACTGAAATCCTCCTGGGAAGATGACTCTGACAT
TGGCATCATACCGCGCGCTCTGAGTCACCTTTTCGATGAGCTGCGCATGA
TGGAGGTGGAGTACACTATGCGCATTTCCTACTTGGAACTGTACAATGAG
GAGCTGTGCGATCTACTGTCCACCGATGACACCACCAAGATACGCATTTT
CGATGACAGCACCAAGAAGGGATCGGTGATTATCCAGGGCCTGGAGGAGA
TACCAGTGCACAGCAAGGATGATGTGTACAAGCTGCTGGAGAAGGGAAAG
GAGCGTCGCAAAACAGCCACTACGCTGATGAATGCACAGTCCTCACGCTC
CCACACTGTATTTTCTATAGTTGTGCACATCAGGGAGAATGGCATCGAAA
GGAGAGGACATGCTGAAAATCGGTAAACTGAATCTGGTGGATCTGGCGGG
CAGTGAAAATGTTTCCAAGGCTGGGAATGAAAAGGGAATACGTGTGCGGG
AAACAGTAAACATCAATCAGAGCCTCTTGACTCTCGGTAGAGTAATTACC
GCTTTGGTCGATCGCGCTCCTCACGTTCCATATCGTGAATCAAAGCTGAC
TAGACTGCTGCAGAATCTCTGGGTGGCAGGACCAAAACCTCCATCATAGC
ACATATCGCGGCACAGACATCGAGGAGACCCTGGAGCACTTAAGGTACGC
CTCATCGCGCAGAAACTCCAACAAGCCCGAGTCAATCGAGCCTGACAAAA
GACTGTGCTCAGAATACCGAAATCGCATAAGCTAAATAGAAGC
UFO05887.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp61F-RA | 3871 | CG9191-RA | 271..1387 | 9..1111 | 5050 | 97.7 | Plus |
| CG32318-RA | 785 | CG32318-RA | 291..609 | 9..327 | 1595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1244390..1245000 | 1000..390 | 2945 | 99.5 | Minus |
| 3L | 28110227 | 3L | 1245193..1245496 | 390..87 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 1246249..1246489 | 327..87 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 1245561..1245640 | 88..9 | 400 | 100 | Minus |
| 3L | 28110227 | 3L | 1246554..1246633 | 88..9 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:55 has no hits.
UFO05887.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:59 Download gff for
UFO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 293..1331 | 1..1033 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:19 Download gff for
UFO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 264..1302 | 1..1033 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:34 Download gff for
UFO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp61F-RA | 264..1302 | 1..1033 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:34 Download gff for
UFO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1244350..1245000 | 390..1033 | 98 | <- | Minus |
| 3L | 1245194..1245494 | 89..389 | 100 | <- | Minus |
| 3L | 1245561..1245646 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:19 Download gff for
UFO05887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1244350..1245000 | 390..1033 | 98 | <- | Minus |
| arm_3L | 1245194..1245494 | 89..389 | 100 | <- | Minus |
| arm_3L | 1245561..1245646 | 1..88 | 95 | | Minus |
