UFO05888.5prime Sequence
1140 bp (1043 high quality bases) assembled on 2009-07-20
> UFO05888.5prime
CAGTCGACATGCCACCCCCAAGACCGAAGGGGATAGGATTTAATACAGGA
GCTACCCAACCCAGATCGAACTCAAACACGCCAATGTCGGAGAGGCAGCA
AATGGCTCTGCTCATCCAAATGACAGCCAACTCGTCGACAGATTCATCCC
GCACCACCTTAAAGAAGAATGAATGCAAGAAAGGAGACGCAGAGACTGAC
GAGGGCAGCCTGAATGAGAAGCAAGAGGTCCTGGACACGAAAGACAAATC
TTCAGCGGAGGAGAGCAGCAACGATGGTAAATCCAGCGATACGAATCATC
AGGGAACTTCGGCTGCCAAGCGCTGCTACTCAGACATAGAGGAGGACTAC
GAGGAATCTGGCGAGGACGTAAAGAAAAAGAAGCGCAAGGATTCGGAGCA
TGGAAAGGACGTGAAGGGGGCCTCCCTGAAGCTCACATCGCGCGTGGAGA
AAAGCTCCAAGCTAGCTGCAACGAAGGGATCCCCGTCAGGAAACAAAAGC
AGCGCTTCCAATGCCGAAAAGGAGCCGGCGGAGACTAGTAAGAATGTAGA
TATTGAGAACGAAACGGAGTGCAGCGATGATTACAAGAGTAACGACAGCC
TATACAACGGAGGACTCAAAGTGCCGCCATTAAAAATTGTGATTCCGCAG
CAGAACTGCTCAATCGACACTGAGGGCAATGTGCTTCGAACTGGCAAGGT
GACTGCCTCTCGCAATGCCGCCCTGCCGTATGTGGTCAGCTCCAATAGCG
ATTCCATTGACACCGTCATAACCAATCAATCTATTAGCCCGCACGAAAGT
CCACAGAAGAGCAATAGCATTTGCTCCACAGCCCTCGATGACAAGAATAT
AAAGCTCTTCAATGACGAAAAGAACCTGAGGGTCCTGCGAAGCTCTCATC
GCACTGGAGTGACCAGTGTGAGCGCAGTTCCAATAACTCCTCCCCGCAAA
TGCAGAGCAGCTCTCATCGCAGCGTCATCGAATCATGCCAACGATCCTGC
AGATGTGAAGCTCTCCTATAGCAACATGACATCTAGTCCGATCCGCAGCC
ACAGTTGACAGAGCCATCACCAATGTCAAGCGGTCGACGTCGTCGAATTC
TCTGTCCAGGAACATAATCCTCGAACGGTGAGTCATTCAG
UFO05888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10984-RD | 2285 | CG10984-RD | 118..1252 | 9..1127 | 5175 | 98 | Plus |
| CG10984-RA | 2267 | CG10984-RA | 100..1234 | 9..1127 | 5175 | 98 | Plus |
| CG10984-RC | 2254 | CG10984-RC | 87..1221 | 9..1127 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12751304..12752212 | 139..1044 | 4395 | 99.7 | Plus |
| 3L | 28110227 | 3L | 12750607..12750739 | 9..141 | 665 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:23:28 has no hits.
UFO05888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:58 Download gff for
UFO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RA | 95..1222 | 2..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:21 Download gff for
UFO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..1209 | 9..1117 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:54 Download gff for
UFO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10984-RC | 87..1209 | 9..1117 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:54 Download gff for
UFO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12750602..12750739 | 2..141 | 97 | -> | Plus |
| 3L | 12751307..12752296 | 142..1117 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:21 Download gff for
UFO05888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12743702..12743839 | 2..141 | 97 | -> | Plus |
| arm_3L | 12744407..12745396 | 142..1117 | 97 | | Plus |
