UFO05890.5prime Sequence
1098 bp (984 high quality bases) assembled on 2009-07-20
> UFO05890.5prime
CAGTCGACATGGCCAGCGAGCCGGAGAACAAGCCACCGATCCTGCACATC
CTCGTGGTGGGCTTCCACCACAAGCTGGGCTGCCAGGTGGAGTTCTCGCA
TCCGCCGCTAATCTCGGGCTCCACGGGACGCAACGAATGCCCCTCCGGCT
GGAAGTACCTGCCCACTCTGGCTCTGCCCGACGGCTCGCATAACTTTGCC
GAGGACACGGTGTTCTTCAACCTGCCCAGTTTGTATGAGCCGGCTGAGAG
TATCTACGGCGTGTCCTGCTATCGCCAGATACGCGTGGAGAAGCTAAAGA
TCCGGACAGCGGACCTCACGCGCAGCACCGTTCAGAAGTCCGTTTGCATA
TTGGCCCGCCTGCCCATCTACGGGTACATCGAGGTGAAGCTAGCCCTCAT
TGCCGATGCCTTTTTCGATCAGGGCGACTTCTCCGGCACGGAACTGCTGG
CCAAGGCCTATCAGCAGCTAAATGCCTGCCTCCAGGACGACGAGTCGCGC
CGCCCGTTGCGCCACTTTCACGTGGGGCTGTCGCTGCGCGAGATCGTACT
CCACTGGCGCCACAAGACGCTAATGCTCTTCAAACTAATGCTGCTGCAGC
GACGAGTGGTGTGTTTCGGTTCGCCCGTACGCCAAATGTGTGTGCTGATC
CTGGGCATGGCATCGCTGGTGCCGCGGCTGCTGGAGAAGGGCTTCCAGGA
GGTGGCCTGTGTGCGCACGTCGCGTCCCCTGTCGCCCATGCCGGATTTCA
CTGCCTCCCTGCAGCGGGAGGCGCAGGCCGAAGCCGAAGCGGAACTGGAG
GCAGTGGCTTCCGTAGCAGCTGCCACCGATGAGCAGAACTGACGCCCGAG
AGCGCCACAGCGGTGGAGGGCGAGGCCGAAGAGCTGGTCCTCGTCTCATC
CGCAGCGTCGCGGGCGAGGAGCAGTCAGTGGCGATGACACGTCGACGCGT
TCCACGCCCAACTCACAGTCGCAGACTCATCGACGCAGACAGCTCGCTGA
CAGAGAGGCAGGCGTGACCACTAGCGTCACTGTCGCCGCTTGTGCCTGTC
ATTCGGATGAGTATCGGCACCGGGTCAGCATCTTCCCAGCGCAAACTT
UFO05890.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11178-RC | 3279 | CG11178-RC | 538..1636 | 9..1091 | 4940 | 97.6 | Plus |
| CG11178-RB | 3043 | CG11178-RB | 302..1400 | 9..1091 | 4940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13606445..13607413 | 9..974 | 4665 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:06:29 has no hits.
UFO05890.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:19 Download gff for
UFO05890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11178-RB | 270..1380 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:23 Download gff for
UFO05890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11178-RB | 297..1407 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:11 Download gff for
UFO05890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11178-RB | 297..1407 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:11 Download gff for
UFO05890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13606440..13607445 | 1..1001 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:23 Download gff for
UFO05890.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13500473..13501478 | 1..1001 | 98 | == | Plus |
