UFO05895.5prime Sequence
1099 bp (979 high quality bases) assembled on 2009-07-20
> UFO05895.5prime
CAGTCGACATGAATAATAATCTTTTTGAGGGCTCCGACGACGATGGGGAG
GATCTGCAGCTGTCCACGAACAAGGACTATGCCAAGACCTACAACATCCT
GCGCAAGAAAGAGCTACTACAGAAATATAAGGATCGTGGCTTGGATGTTT
CCGAATCGGAATTCGACAGTGACAGCTCGTCATCCGAGGAGGACGAGGTG
GACCCCAAATTCGACCAGGACTTCTTCAAGACCCTGTCCTCGCTGAAAAG
TAAAGACCCATGTATCTACGACAAGGGTACGAAATTCTTCAGTGAGTCCT
CCGGCGATGAAGATGATAAGGATGGGGAGGCTCCGAAAAAGAAGAAAAAA
GCCAAGCCAGTCACTTTGAAGGACTACGAACGAAAGGTAATTTTGGAGCA
TAATGGCAAGTTCGAGAGTTCAGATGAGGAGCAGCAGGAAAAGGAGCACG
AGGAACTCCAACGTGCGCAGTCACCGAGCGCCGTGGAGGAGGAGCGCCGT
CTAAAGGCCGAGTTCCGGAAGGTGATGAACAAGGAAGACGACAGTGAGGA
TGAGGAATTTGGAGGTATATTCAAGAAGCGCAGTAAGACCAAGGAGCAAA
CAGCTGCCGAGGAGGCAGACTTTGCCAAATGGTTGGCGGGAAAACAAGCT
GAGATTCAAGAAACCGACAAGAAGCAGTTGGAGCCTCTAAAACAGTACTG
GAGCAGCAACAAGCTGACCCAGGGCGAGAGTTTCCTCAGGGATTACATTC
TCAACAAGGGCTATGCAAACACGGATGAGTCCGCCATTCCCACCTACGAT
GAGATCGTGGGCGAAGCTGCTCCGCTCTCCGAGGATGAGCAGGAACTTGA
GAAGCAGGCAGAGTTTGAGCACAAGTACAATTTCCGCTTTGAGGAGCCAG
ATGCGGACTTCATAAAGCGCTATCCCCCGCACCATCGAACAATCCTGGCG
TCGCACGGATGACAAGAGGGAAAGAAAAACGCAGGAGCTGAGGAGCCGCA
GGATCAGGAGAACAGCAAAGATGAGGAGGTGGACTGGTCAGCATGAGCGT
AGGGAGATCGATGAAGAATCGCAATAAATCCGGTCACTGGCAACAATGA
UFO05895.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5645-RA | 2745 | CG5645-RA | 73..1175 | 9..1099 | 4965 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12135565..12136450 | 1012..127 | 4165 | 99 | Minus |
| 3L | 28110227 | 3L | 12136512..12136634 | 131..9 | 600 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:06 has no hits.
UFO05895.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:02 Download gff for
UFO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 70..1171 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:46 Download gff for
UFO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 73..1174 | 9..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:21 Download gff for
UFO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5645-RA | 73..1174 | 9..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:21 Download gff for
UFO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12135467..12136450 | 127..1098 | 97 | <- | Minus |
| 3L | 12136517..12136634 | 9..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:46 Download gff for
UFO05895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12129617..12129734 | 9..126 | 100 | | Minus |
| arm_3L | 12128567..12129550 | 127..1098 | 97 | <- | Minus |
