UFO05896.5prime Sequence
1051 bp (886 high quality bases) assembled on 2009-07-20
> UFO05896.5prime
CAGTCGACATGAATCGGCCCAGTAACTGGGATGATCCCCAGGGACCATGC
CGCTACTGTGAATCGCCGGTGGAGGACGACAACTACCTGGAGTGCCAGGA
ATGCAGGCGGATGGTTCACATCAAATGCCTGCCGCATGCTTGCACGCCCG
GAGATCTTTTAGGCGACGTTTTCTTCGAGTTCACGTGCGTCAAGTGTGTG
CTGGATAAAGCTAAGGAATCGGTCATACCCTCAGATCTAGAACCCATTAA
GGAAGTGATCGTGCGCCAAAGGATACCTTGGCTGCTGGTGCTCACCCTAA
CGCTCTACAATCTGTCCATCAAACAAAAGGGCTTGGGACACCATGGATTC
TTCCATTGGCGCACGCACATCATCAGTTTTGTGGACAAGAACTGGAACTA
TATATTCGGTCCCAATGTGCGGCGTCGCAAGCAATGGACTGGTTCCGTAT
CCGGCGCACTGTCCCACAACAGTCCGGAGTACTTTCAGTCTGGTCTGGAT
GTCTTTCAGGAGAACGGCTGGTGGAAACTGGCCAAGCCCTTTCAAACCCC
AAGAAGCGTTCTCAAAGAATATGAGAAAAAGCAACAGTTGCGGCTACAAA
TGCGTATTGAAAAGCGGTTGCCTGCAGCGGACGAGACCAGCTGTAGCAGC
GAGATCTCAGTGGCGGATCATGCCCAGGATAACCCACCGCTTATTAAAGC
AGAAGCTGAGAAACCAGTTCAACAGAGGGCTGTGCGCGAACAATTCCCTA
CATGGGCCGTTTGCCAAAGATACAAACATGACCTTCACCCTTGTCACAGG
AAACGCTTCCAGGGCCACCAAATTCTTCAAGAAAATATAGCGCCACCAAG
TCAGACGAGGAGACCACAGAATCAGCCTATGAGCATGGTAGAGCAGGCCT
GATGGATTTCTGGCTGAAGTTTGGAAAGCGATGATTTACATGTTTGGTAC
TACAGGCATATGCCCCACCCTGATGGAGCGGGTAAATGAATTCTCATGAC
GAGCGTGCTCACGCACCTGATATGAGTCTTTCGACTGGATCAGTTGGCAT
C
UFO05896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atac2-RA | 2427 | CG10414-RA | 72..1103 | 9..1018 | 4495 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18611768..18612178 | 419..9 | 2055 | 100 | Minus |
| 2L | 23513712 | 2L | 18611327..18611501 | 744..571 | 825 | 99.4 | Minus |
| 2L | 23513712 | 2L | 18611557..18611708 | 570..419 | 760 | 100 | Minus |
| 2L | 23513712 | 2L | 18611063..18611260 | 937..745 | 590 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:14 has no hits.
UFO05896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:01 Download gff for
UFO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10414-RA | 59..1079 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:57 Download gff for
UFO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 66..1086 | 1..1004 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:34 Download gff for
UFO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atac2-RA | 66..1086 | 1..1004 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:34 Download gff for
UFO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18611327..18611501 | 571..744 | 99 | <- | Minus |
| 2L | 18611557..18611708 | 419..570 | 100 | <- | Minus |
| 2L | 18611769..18612183 | 1..418 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:57 Download gff for
UFO05896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18611557..18611708 | 419..570 | 100 | <- | Minus |
| arm_2L | 18611327..18611501 | 571..744 | 99 | <- | Minus |
| arm_2L | 18611769..18612183 | 1..418 | 99 | | Minus |
