UFO05901.5prime Sequence
1137 bp (972 high quality bases) assembled on 2009-07-25
> UFO05901.5prime
CAGTCGACATGTGGTGCATTGTCAACCTGCCCAACGGCACCCAACAAGCC
GTCAAGTGGGATCCCAAAGCCAATGGTCAGGAGTGTCTGGAGAAGGTCTG
TCGCGCAATGAACATCATCTGCGAGATGGAGTACTTCGGCCTGGAGCACT
GGACGCCCAACCAGAAGGAGTCGCAGACGCGCCAGTGGATCAATCTGCGC
AATCGGCTATCCGGCGACAGTGGCAGCAGCGGCAGCGGCATCCAGCTGAT
GCTGGCGCTGCGGGTCAAGTTCTGGGTGCCGGTGCACTTCATCCTGCAGG
AGAGCGTGCGTAATTTGTTCTACATGCAGGCCAGGCGGGATCTGCTCGAG
GGACGGCTCACTGCGCCGGACTGGAGTGGAGCGGCCAAGTTGGCGGCGCT
GCTCTGCCAGGCGGATGGTCTGCGATTCAATGAGTCGTCGCTGAAGGCCG
ACTGCCCGATGCGAATGAGGCGGGAGTTGGCGCAACAGCAGCAGCAGCAA
CAGCAGCAGGCGCAGCAGCATAGGTTGGAGCAGCAGCGCAAGGAGAAGGA
GCATGTGCTGAGCTTCAAGAAGCGCCGCCTGTCCAAGCAGAAGTCCATGG
AGCACATCGAGGTCTGTACGCTGCCAGCGGCAAGCACCACCAGCTGCAGT
CTCCAGCCCTCGCCATCCGCATCCGCCTCAGCATCTGCATCCGCCTCAGC
ATCTGCATCCGCCTCCACATCCGCCTGCTCGCAAACCCACTCGAACAGCA
GCTCGAGCAGCCCCAGCAACAGCAGCAGCCAGACGGGCCTGGACGAGCGA
CTGGCCAGCAATCCGCTCCGCGTCTACGAGGAGTACTTCATGCAGCCGAG
CTGCGAGGGGTGAGCCACCGGGCGGACTCTCTGGCGCAAATAGCCGTGGA
AGCCCGGCAAGCTGGCCAAGCTGCAGATGAGCCTTCAAGACGGCCAGTAC
TGGCCTGCCTCAGTCCATCCAGGATTCTCGAAGGCTACGGCGAGGGAGCC
TCCTTAGCGGCGGTGACCACCACGACGAGTGCCACGCCGCCTGCCTACAT
TGCCTGCGTGGCCGCCCATGCCATCCCCGTCTGCCGGGGGGGCAAAAACC
GAGCCATCCCCTTGGGCCCCATCGCGTGCGGCCCAGT
UFO05901.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnr1-RB | 3553 | CG12489-RB | 555..1668 | 9..1137 | 4875 | 96.7 | Plus |
| dnr1-RA | 3194 | CG12489-RA | 555..1668 | 9..1137 | 4875 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22565795..22566691 | 995..94 | 4045 | 98.3 | Minus |
| 2R | 25286936 | 2R | 22592322..22592410 | 97..9 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:32:10 has no hits.
UFO05901.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:43 Download gff for
UFO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dnr1-RA | 559..1540 | 9..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:13 Download gff for
UFO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1536 | 9..995 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:37 Download gff for
UFO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnr1-RA | 555..1536 | 9..995 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:37 Download gff for
UFO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22592333..22592410 | 9..86 | 100 | | Minus |
| 2R | 22565795..22566695 | 87..995 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:13 Download gff for
UFO05901.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18453300..18454200 | 87..995 | 98 | -> | Minus |
| arm_2R | 18479838..18479915 | 9..86 | 100 | | Minus |
