UFO05902.5prime Sequence
1136 bp (995 high quality bases) assembled on 2009-07-25
> UFO05902.5prime
CAGTCGACATGAATTATCAGAAGGCCAGTGAAAAGCAGTCGTCGTCCTCA
TTGAAGAAGCGGCCGCCGGGCAACGGCAATAGCATACAAAACTTTTGGAA
CGATCGCATTATGGAGCGCTTCATAAAGGCGAATCTATTCATTATCTGCT
GCGTGGTGGCGGTTCTATTGCTGATCGTCTATCTGGGTGCCTTCTCGTGT
GAGGTCTCGTGGATACTGGAGGCCCACGGCGAGCTGCCCTTCGCCGCCTA
CACGCTCTGCTCGCTCTACTTTGTCATGTTCGTGGCCACCACGATCCTTA
TCCACGGCCTGGTCAGCGGACTCTGCTGGCCGTTGTTCGCCTGGTCGGGC
ATCATCGGTCTCCTCTCAATTCCAGAGCTGGTCTTTGTCATGATCATGAC
CACACAGCACTGGGGTCTGCAATCTGTGCATGGATTAACGGAGCTCACCT
CCTACCTGATTCGCCTCATCATCAACTGCTTCGCGCTGATCTGTGTGATT
CCCACGGGCATCAGGTGGCGACGGGAGACTCAGGTGTTGAGTCAGCTGCA
AGGATTGGCCACCAGACTTTCCCTGCAGACTCCAGCGCCCAGTGTGCCCA
TTACAAAGGCAGATTCCCGGCGATCCAGCCAGCGGCTAAGTGGATTCGAG
AATGCCGGCTACCAGCTGTGCGATGAAACAGCTTCCAAGTTGCCACTAGG
GCCAGGAATGGGACTGGGCATGAACAACCAGTGTGGAGGCAGTCAAGCAT
TTGGCTCGCAGAACGAATTCAACGCCAGCATGTTTGCACCCGCATTGGGC
ACAGCAGTTCAACAATGCCACGTTGATGCAGCGCGGCGGACAGGCGGAGC
ATGTGTGGTCATCGCGCCCAGTCGCTGATGGATCTGCGCTCACTCTGCCC
GGCATGTACAATCCACGACATGTGCTCGATACGAGGATAAAAACGCCAAG
TACTTCACATCACCATCGACGATTTGAAGAACAATCTCCACGACTCGCAC
GACATCGCCGCCTTCGCTGATCGGTTCCACAGCACGATCCATCTACTGCT
CATGGAGCCCAGCAGTTGAACCGCCACGGCCAGCGAGGGCCACCATCGTC
CACGGGCACACAACACCCACCGGTTAACTGTCCGAA
UFO05902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd6-RB | 3135 | CG11175-RB | 984..2104 | 9..1112 | 5105 | 98.1 | Plus |
| Rcd6-RA | 2574 | CG11175-RA | 423..1543 | 9..1112 | 5105 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20629310..20629933 | 1030..413 | 2715 | 98.2 | Minus |
| 2R | 25286936 | 2R | 20630025..20630266 | 414..173 | 1210 | 100 | Minus |
| 2R | 25286936 | 2R | 20630684..20630848 | 173..9 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:08:17 has no hits.
UFO05902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:36:44 Download gff for
UFO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11175-RA | 390..1516 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:36 Download gff for
UFO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd6-RA | 423..1549 | 9..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:49 Download gff for
UFO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd6-RA | 423..1549 | 9..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:49 Download gff for
UFO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20629211..20629932 | 414..1119 | 96 | <- | Minus |
| 2R | 20630026..20630265 | 174..413 | 100 | <- | Minus |
| 2R | 20630684..20630848 | 9..173 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:36 Download gff for
UFO05902.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16516716..16517437 | 414..1119 | 96 | <- | Minus |
| arm_2R | 16517531..16517770 | 174..413 | 100 | <- | Minus |
| arm_2R | 16518189..16518353 | 9..173 | 100 | | Minus |
