UFO05904.5prime Sequence
1116 bp (1027 high quality bases) assembled on 2009-07-25
> UFO05904.5prime
CAGTCGACATGTCAGAGAACAAGGACGAGGCCTTGACCAGTTTTCAGAGC
ATTACGGGCATCGACGATGTGGGCGAAGCCTTTTCCCACTTGGAGGCCGC
CGACTGGAATCTTGTGGAGGCTCTAAGTCGCGTGATCCCGCACGAGGATG
CGCCGCTGACCAGTCCCCATCCTATCCTGGTGCCAGAGCCACCGGCCAGG
AATGCCGTGGAGAGCACGAATGGCTTCCGTCCGCCTGGCTTTGATGAAAT
GCCCGGGACTTCTAACGCGTCCGGTTTCTTTGCGGCCGCCCTTCAAAACC
AGAACCAAAACCTAAACCTAAATCAGCCGCACATCCAGCAAAGATTTCCA
ACGTCACAATTGCTAGCCCAGCTGACGTCCAGTATCAACCTGGACCCCGC
GTCCAGCCAAAACAACAACCAAAACGTGATCACCTTCAACATCCACTTTA
ACCAGCAGCTCTACCAGCTCCGTTTACCATCGGAGGCCACAGTTGAACAA
CTTAAACGCAAAATCTTTGCCGAGACAAGTGTGCCTGTGTGCAGGCAAGC
CATTCGCGGCTGGCCACCCTCCAAAGCCAGCGATGCACAGCAGCTGGGCA
CTCGTTTATGCAACCTAGATCTCTCCCCGGAGAATGAACTGATCCTGGTG
GACCTCACCGAAGACGGTTTCATGGACACCGAACAGGATGAAGTGACGCA
GCGCGTGGACAAGGACTTCACCATTTTCATACAGTTCGAATCGGACCCAC
CACTCACTCTTAGCCTGCCAGGACGTATGACAGTGCAAGAGGTAAAGATG
AACGTGTTCGACATCAAGAGCATACCAGTGCGCCACCAGGAGTGGACCGG
CTGGCCCAACGGTTGTGACAATGACACCACTCTGGCGCAATCTGGCATTG
GGCTCTCGCATAGATTCGCTGTTCGCAGCACGGAACGATCAGCGCCAACA
AATTCCAATCAGCACAACGCATTCGATGTGGTGACCGTGGACAGTGAGAG
CTCGACAGAAGAGTTCGAAAAATGCCACAGACTTCACAACGCCGAGTACA
TTTTACTGACTCGCCACCGCTCAGCCCCCACAGACCCTAATACAACGAAT
CGATGGATGAATTATG
UFO05904.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| casp-RB | 2557 | CG8400-RB | 122..1211 | 9..1093 | 5245 | 99.1 | Plus |
| casp-RA | 2557 | CG8400-RA | 122..1211 | 9..1093 | 5245 | 99.1 | Plus |
| casp-RC | 2542 | CG8400-RC | 122..1196 | 9..1093 | 5010 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16027337..16027572 | 351..116 | 1180 | 100 | Minus |
| 2R | 25286936 | 2R | 16026611..16026812 | 887..686 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 16026866..16027057 | 686..495 | 960 | 100 | Minus |
| 2R | 25286936 | 2R | 16026353..16026547 | 1079..887 | 750 | 96.9 | Minus |
| 2R | 25286936 | 2R | 16027135..16027278 | 495..352 | 720 | 100 | Minus |
| 2R | 25286936 | 2R | 16027664..16027736 | 117..45 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 16027884..16027922 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:18 has no hits.
UFO05904.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:44 Download gff for
UFO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RB | 118..1211 | 4..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:29 Download gff for
UFO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RA | 118..1211 | 4..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:02 Download gff for
UFO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| casp-RA | 118..1211 | 4..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:02 Download gff for
UFO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16026339..16026546 | 888..1090 | 95 | <- | Minus |
| 2R | 16026611..16026812 | 686..887 | 100 | <- | Minus |
| 2R | 16026867..16027056 | 496..685 | 100 | <- | Minus |
| 2R | 16027135..16027278 | 352..495 | 100 | <- | Minus |
| 2R | 16027337..16027571 | 117..351 | 100 | <- | Minus |
| 2R | 16027665..16027733 | 48..116 | 100 | <- | Minus |
| 2R | 16027884..16027926 | 4..47 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:29 Download gff for
UFO05904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11913844..11914051 | 888..1090 | 95 | <- | Minus |
| arm_2R | 11914116..11914317 | 686..887 | 100 | <- | Minus |
| arm_2R | 11914372..11914561 | 496..685 | 100 | <- | Minus |
| arm_2R | 11914640..11914783 | 352..495 | 100 | <- | Minus |
| arm_2R | 11914842..11915076 | 117..351 | 100 | <- | Minus |
| arm_2R | 11915170..11915238 | 48..116 | 100 | <- | Minus |
| arm_2R | 11915389..11915431 | 4..47 | 95 | | Minus |
