UFO05907.5prime Sequence
1100 bp (999 high quality bases) assembled on 2009-07-25
> UFO05907.5prime
CAGTCGACATGAAAGGCAATCATTATAAAATGTCTCGTAACAAAGACAAA
TACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACAT
AGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCG
TCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTC
TACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCT
GACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTC
CCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAAC
AACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGT
CATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCT
ACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCTGGACAAC
TTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGC
CAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATA
ATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATACTGTCCG
TCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGAT
ACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGC
AATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGA
ATCTCCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAA
GTACGTCGATGGCTGTGCGATATTCTTCAGGCGTCCAAGTTTACGCTGAT
CAAGAATCATTGATCGAGTTCATCAGCTGGCATGGCCATGCCGAGGCTCC
GACACATGCTGAACCGCGTAATGCCTAGGATACATCGGTCTGGCGCACTG
CTTCAAGGTGACGAAACGCATGGGAGCCGATGTCCCAGGTGACCCAATCT
CGCAGCGCTGTTCGTCTGCACGGGCAAATACCTGGGACCTGAGTCTGGCA
UFO05907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 187..1288 | 9..1094 | 4975 | 97.8 | Plus |
| twin-RC | 2586 | CG31137-RC | 83..1184 | 9..1094 | 4975 | 97.8 | Plus |
| twin-RE | 3548 | CG31137-RE | 347..1448 | 9..1094 | 4975 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199283..24199587 | 881..577 | 1510 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 332..139 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 507..331 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220345 | 145..14 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 577..508 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:27 has no hits.
UFO05907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:46 Download gff for
UFO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 77..1188 | 3..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:09 Download gff for
UFO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1452 | 3..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:16 Download gff for
UFO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 341..1452 | 3..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:16 Download gff for
UFO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24199275..24199587 | 577..888 | 99 | <- | Minus |
| 3R | 24199883..24199951 | 508..576 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 332..507 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 145..331 | 100 | <- | Minus |
| 3R | 24220215..24220352 | 7..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:09 Download gff for
UFO05907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024997..20025309 | 577..888 | 99 | <- | Minus |
| arm_3R | 20025605..20025673 | 508..576 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 332..507 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 145..331 | 100 | <- | Minus |
| arm_3R | 20045937..20046074 | 7..144 | 97 | | Minus |
