UFO05908.5prime Sequence
1132 bp (1016 high quality bases) assembled on 2009-07-25
> UFO05908.5prime
CAGTCGACATGAAGCTGCCGGTGATTTGTCGCACGTGCGACTCCACGGAC
ACCGACAACCTTCTGAAGCTGGCCACGCCCTCGAAAAAGTATCCGGACAA
GTTGCTTTCGGAGATTTTATGCGAGCTAACCGAAATCAATCTGGATGCAA
CTGGTAGTCAGAAATTTCCGCAATGCTTGTGCAGTGGATGCACCAAAAAA
TTAATGGGTGCCTATTGCTATGTGAAGCAGGCGATGGCCGCCAACGAACT
TCTAATGAAGCATCTAAAGAACGGTGCTGCTCCAACGTCAACCGACTGTC
TGCAGGAGGCGCCGATGGAGCTGTGTGCTGAGCAGCATGTGGAAGTCAAG
CTGGAGACTGAGGATGAGGACTGTGGCGAAAATGATGTTACTATCACTTG
TTCCGAACTACCGGAACCGGACGAAACGGACATGGAGAGCAAAAAGTCGG
TGGACCCACTGACCATGATTGAAACGGTGAAGCTGGAAATGGAACCCAGA
AGCGTGGAGAAGCCAGCGTATGACGATCCCACATCGGACTTTGAAGACGA
AGACTCCCTGGATAATTTGCCACTGTATAATCGCATTCAAAAGTGGAAAA
CAGGAAGAAAGTCTGTATATAAATGTCACGACTGCCCTAGGAGTTTTAAA
CGATTCGACTTCTTGAAACGCCATGAAATGCGCGTCCATAAGCCAGAAAC
TCGATTATATGACTGCTCCCTTTGCATTCGCAAGTTCAGCCGCAGCGAAG
CCCTCGAAGCACACCTAAAAATTCACCGGAATTCAAAACGATCGGCCAAC
ATTAGCGAGCACAAGAAGGCCAAGGCTGTGGATTTGAATCTCTGCAAACC
GCATGGCTACAAGCTGATTGAGTGCATGATCTGTCAGAGCCAATACAACA
AGATTGCTGATCTGCGCCGGCATTTGGAGGAGCACCCCCGATATTGTTAG
CCTGGGGCGGTCGGCCAAATATGGAGCCCATGAGCTGGCCGAGCTGTTTT
ATCCGATTCAAAGGACCTCAGTGAGGGAGCAGTAATCAACTTGATTCGCA
GGATCGTAGCGGGCGGGTTTCTATCACGTTTCTATTCGATAACGAACAAG
TTGCTACGATGGAATCTGAACGCTCGGAACGA
UFO05908.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18476-RA | 2946 | CG18476-RA | 96..1224 | 4..1128 | 5205 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11676806..11677349 | 1097..554 | 2225 | 96.3 | Minus |
3R | 32079331 | 3R | 11677405..11677817 | 553..141 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 11677885..11678021 | 140..4 | 670 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:00 has no hits.
UFO05908.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:47 Download gff for
UFO05908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18476-RA | 89..1206 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:58 Download gff for
UFO05908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18476-RA | 92..1209 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:06 Download gff for
UFO05908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18476-RA | 92..1209 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:06 Download gff for
UFO05908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11676786..11677349 | 554..1113 | 96 | <- | Minus |
3R | 11677405..11677817 | 141..553 | 100 | <- | Minus |
3R | 11677885..11678020 | 1..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:58 Download gff for
UFO05908.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7502508..7503071 | 554..1113 | 96 | <- | Minus |
arm_3R | 7503607..7503742 | 1..140 | 97 | | Minus |
arm_3R | 7503127..7503539 | 141..553 | 100 | <- | Minus |