UFO05914.5prime Sequence
1118 bp (991 high quality bases) assembled on 2009-07-25
> UFO05914.5prime
CAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTGATCGATGT
TTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATTTGGAAAAA
AGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCTGCAGGAGA
AGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAACGACTTCGC
GACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGATAAGAGCTC
CCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACGCTTTAAGG
TGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAGGCTTGGGG
GCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGACGCACGCAA
TTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGACCAGTATG
AGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTTTAGATCGA
GACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGACCGCCATAA
GTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGACAATGACG
GCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCGAATACTAC
ATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTCATATACGA
TGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGCTACCACGG
ACAGCAACAACAGCAACGAGACAAGCGGTTCTCCAAGCAGTGTCACATCC
GGAGGCAGTCCATCACAGTCCCCTGTCACGGTTCAACAAATTTTAAACAC
TTCGTCGCAGGGGCAGCTAGTAGTGGTAGCAGCGCAGCTAGCGCAGCACT
GTTTCAGCAGCAGCTGACAGCGGCACAATCGAATGGCCAACAATGGGGGC
TACGCGAGCGAAACAGTGCAGCTTCTTCGTCTGCTACAACATCTACAGAT
CCTGCAGGCGGCACAGTTGCTGTAATATTGGGGGTTGGGAGGGCCTAGCC
GATAAACGCAACAAGAAGAGCGAAAGCATGCCCTAAATGAAACACAACCC
TCATTCACTTATAAACTA
UFO05914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Not3-RB | 3919 | CG8426-RB | 580..1685 | 9..1115 | 5155 | 98.2 | Plus |
| Not3-RA | 3406 | CG8426-RA | 580..1685 | 9..1115 | 5155 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5661376..5662168 | 1078..282 | 3575 | 98.2 | Minus |
| 2R | 25286936 | 2R | 5662227..5662378 | 281..130 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 5662456..5662555 | 131..32 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:01 has no hits.
UFO05914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:53 Download gff for
UFO05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)NC136-RA | 571..1672 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:50 Download gff for
UFO05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)NC136-RA | 573..1674 | 1..1104 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:25 Download gff for
UFO05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Not3-RA | 573..1674 | 1..1104 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:25 Download gff for
UFO05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5661385..5662168 | 282..1070 | 98 | <- | Minus |
| 2R | 5662227..5662376 | 132..281 | 100 | <- | Minus |
| 2R | 5662456..5662553 | 34..131 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:50 Download gff for
UFO05914.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1548890..1549673 | 282..1070 | 98 | <- | Minus |
| arm_2R | 1549732..1549881 | 132..281 | 100 | <- | Minus |
| arm_2R | 1549961..1550058 | 34..131 | 100 | <- | Minus |
