UFO05916.5prime Sequence
1130 bp (1000 high quality bases) assembled on 2009-07-25
> UFO05916.5prime
CAGTCGACATGGCAACTCACGCCGAAAAGGAGTTCTACCACCTGAACGTC
AGCGTGTCCAAAGCTTTAAATGGCCTGGAAGCGCCACTCAAAACCAAACA
TGCCCGCTCCATTATTATTATGATACACAAGGCCAAAGAGGCCAAAACAT
TCTGGATGATCATCTCCCGGCAGCCTTTGATGCAGAGTAGATTTACTGCC
TGGAAGTTTTCGCATCTGCTGCACAAGGTCCTGCGAGAGGGTCATGAAAG
TGCCATCCGCCACTCGCAGAGCCACAAGAAGATGATACTGGAGGTGGGAA
AAATGTGGGGCCTGCTGCAGGACGATATTGGATGCTGCATACAGGCGTAT
AGTAAGCTCTTGGCCACAAAATTAAACTTCCACGACAAAAATCGAATGTT
TCCCGGCACCCTGAACATTTCGTTCACGGAACTCTTCATTGCTGTGGATA
GGGATTTAAATTATTGTTTTCAACTGTGCGTGGAAATTTTCGACTACTTG
GAGGATATAATTGCGCTGCAATTGACGATATTTTCATCTATGGAAAAGTA
CAGAATGTCGTCGATGACACCGCAGGGACAATGTAGATTAGCGCCAATAG
TTTGCCTTATCCAGGATTCCAATGCGTTGTACGATTTAAGCGTTCGGTTA
ATGTTTAAACTACACGATGGTGTACCATACGACGTTGTTTCCGGACACAG
AGATCGCTTTCACGGTCTGTTTTTAAAGTTGAAGAGTTTTTACAACAACG
TGCGACCGCTTCAGTATTTCAAGGACCTAATAACAATCCCGGAATTGCCG
GACTCAAGTCCTAACTTCAAGTCCCAAAACGATTTCACCAGTTATGTACC
GCCAGTGGTTCACGTTCCCAGGAGCCCGGATCCGGTTGTTGAAGACCTTG
TGGCAATACAACAATCACGAGCTGGAAGCCTTCAGTCAAGCCCAGCAGCA
GCTTATCATTTGTGGGGGGTATAATCAGCGAGAAAGAGGCTAGCATTGAG
GAGCTGTCATTCAAATTGGAGGCAATGCAAAAATTCGACGCACTGCAGCT
AGCTACGACCCGACGTTCAGGGTGCACGAACAATACTGGGCTGTCCATGA
TCTGGTCTGGCGAAGAATGGTGCACCTTTC
UFO05916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip1-RA | 4093 | CG10971-RA | 264..1398 | 9..1130 | 5080 | 97.5 | Plus |
| Hip1-RB | 4099 | CG10971-RB | 477..1575 | 45..1130 | 4900 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12771519..12772103 | 1049..466 | 2560 | 96.9 | Minus |
| 3L | 28110227 | 3L | 12772162..12772584 | 466..44 | 2115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:19 has no hits.
UFO05916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:56 Download gff for
UFO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10971-RA | 251..1394 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:09 Download gff for
UFO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip1-RA | 255..1398 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:15 Download gff for
UFO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip1-RA | 255..1398 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:15 Download gff for
UFO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12771426..12772102 | 467..1130 | 95 | <- | Minus |
| 3L | 12772162..12772583 | 45..466 | 100 | <- | Minus |
| 3L | 12773275..12773319 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:09 Download gff for
UFO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12764526..12765202 | 467..1130 | 95 | <- | Minus |
| arm_3L | 12765262..12765683 | 45..466 | 100 | <- | Minus |
| arm_3L | 12766375..12766419 | 1..44 | 93 | | Minus |
