UFO05917.5prime Sequence
1129 bp (1024 high quality bases) assembled on 2009-07-25
> UFO05917.5prime
CAGTCGACATGGGCGGCTCCGTGAGCCAGGTGTTCCGATCCGGATCCGCA
CTCCTCTCGCATCGCGACGGAAAGCTGTCCAAGGCCACCGAAGAGACCAT
ACAGACACTGTTTGACATCCTGCGCGCCAATCCGAAGGTTTCCCTGCAGA
CCCTCGAGAGCCTGCTCATCCAGATCCCAAAGAACGAGAATATCCTGGCC
ATGCATGACGACTATGGATACAACATCCTGCAGCGCAGCGTCGGCCTCAA
CCACATCGATCTCACTAAGTGGCTGCTGCATCGCCACCGCCCGGACGTTA
ACCGCTCGCCCTGCTCCCTGCCCCTGCACATCGCCACCCTGCGTGGCTAC
GAGGAGTGCGTGGAGTTATTGCTTCGGCATGGCGCACGTATCGACGTGGA
CACTCGGATGTGTTTTCCTGGCGCCCACACGAGAAATTGCGAGGAGAGCG
GCAAATGGCACAACAACGTGGACGATGTCAGCGAGCGGCTAAACACAAAG
CTACAGAACGCGCTCTTCTATGCAATCGACGGAGATCAGTACAATGTTCT
AAGCTTGCTCACCCAAAAAATGGAGGAGCCGTGGATCCCCTTCCGCGTGA
AAAAGCCCCTGCTCCACTTGGCCTGCGAACGCGGCGCCTGGAATTGCGTC
CAGCAACTAGTGGTCACCCGTTCGGAGGAAATCAATCTTATTATGGACGA
GTATTACCCGATTCACCATGCCGTGCTTCATGATGGTCGCTTTCTTGAGC
TACTCATTCATCAGGGTGCAATTACAACTGTACGCACCTGCACCCAACAA
ATGACCCTACTGCATGTGGTTATTTTTGCTGCTCGTAAGTCTGCTGAAGA
CACGTTGGCCACTCTTCGCATCCTGCTGGAACGAGGATGCAAAGAGCTAA
TCAACGCACAGACTCGTTGGGAAACACTCCACTGCACGCCCTGATAGTGC
GCTATGCCCTTGAAGAAGCCCGGTACGGCTACGACAAGTGGAGACAGTGG
GGATGTGGTGCACCTAATGGCGATTTCTCCCTGGAGACGGGGCAGCATCG
ATTAACAAGCGGGAACATGCCATGGCTGTGGTGTTCGACCCTGCGAACTG
GGAGTTGCTACGACTGCTAGCATGCTATC
UFO05917.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13933-RB | 3162 | CG13933-RB | 357..1486 | 9..1126 | 5075 | 97.6 | Plus |
| CG13933-RA | 3165 | CG13933-RA | 357..1486 | 9..1126 | 5075 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1773981..1774791 | 819..9 | 4040 | 99.9 | Minus |
| 3L | 28110227 | 3L | 1773701..1773911 | 1030..819 | 840 | 96.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:34 has no hits.
UFO05917.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:59 Download gff for
UFO05917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 346..1363 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:26:33 Download gff for
UFO05917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 350..1367 | 1..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:40 Download gff for
UFO05917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13933-RA | 350..1367 | 1..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:40 Download gff for
UFO05917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1773711..1773910 | 820..1019 | 96 | <- | Minus |
| 3L | 1773981..1774795 | 1..819 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:26:33 Download gff for
UFO05917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1773711..1773910 | 820..1019 | 96 | <- | Minus |
| arm_3L | 1773981..1774795 | 1..819 | 99 | | Minus |
