UFO05919.5prime Sequence
1092 bp (977 high quality bases) assembled on 2009-07-25
> UFO05919.5prime
CAGTCGACATGACGTTTCACAAAACCTTTGGTTACGGATGCATTGTATTA
ATATGTTTTGAACTCCTGTTTGCTGGAGTTGAAACGTCCAGCGAAAATGA
TGATGAATATTTAACACAGAAAGAAATCATATTAGAAAAGTCATATCACG
GTTTAATTCGAGAAAATGAAACACTTGTAGAAATAACTCCCCTTATTAAA
GTGAACGAAGAGAAAATTTGTAACTTCCATATTCTCAAAAAACCGTATCA
CGAAATTCCATTTAAGATTGAACTGGTAAATAACCTAGGTATTTTAAAAG
CACGTCGGACACTAAATTGCGAGAATCGTAAAAGTTATCACTTTGAAATC
TGTGCAATCTATTGTGATGGAACACCTTCAAATACAGCCAATGTTCATAT
TACTGTTATCGACGTAAATGAGTATGCTCCAACATTCTTAGAACCGTCTT
ACGTAATTGAAGTAGACGAGGGAAGACTTTATAACGAGATCCTAAGAGTC
GAAGCTTCCGATAAAGACTGCACTCCGCTCTTTGGTGATGTTTGCAAATA
TGAGATTCTTAACAATGATGAACCATTTTCAATAGATAACGAAGGTTCAA
TTAAAAACACTGAACCACTTTCTCACAAAGCTTCTCATAACCACATTCTG
TCCGTGGTTGCCTATGATTGTGCAATGAAAGAATCTGCACCCATTATGGT
CAGCATTAAAGTTCGACGCGTTTGTGAAACAAAGTTTGTAGGCATGCCAG
ACGCATTGACTACACGTCTGGAAGCACCGAAAGCCTTCAATTGTTTCCCA
ATGCTCGCCTAGACTTATGTGACATTTCTTGCAAAAATGAAGAGACCTTA
GGATTCATTCTTCCATAGCCCTTAGACAAGCACATCTCATTCTGGGTGCG
ATCGGGATATATCTAATTGCACTTCAGCCAAAAAGTGAAGACCTTTGCAC
ATGGGGGCAGATGGACTAAAGAGTTAGTATGACGAGTCTAGACCATATTT
CACTTTGATGGGTCTACTGGAGGTAGTAGTCCTGCACCTGTTATTGATCT
TACGATTTTCATCGCACCTTAGCATTCTAACTATCGACCACA
UFO05919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cals-RD | 6077 | CG11059-RD | 187..1275 | 8..1078 | 4875 | 97.7 | Plus |
Cals-RC | 3696 | CG11059-RC | 184..1272 | 8..1078 | 4875 | 97.7 | Plus |
Cals-RB | 3872 | CG11059-RB | 187..1275 | 8..1078 | 4875 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1120106..1120613 | 766..260 | 2475 | 99.6 | Minus |
4 | 1348131 | 4 | 1120659..1120803 | 266..122 | 725 | 100 | Minus |
4 | 1348131 | 4 | 1121459..1121574 | 123..8 | 580 | 100 | Minus |
4 | 1348131 | 4 | 1119939..1120048 | 874..766 | 500 | 99.1 | Minus |
4 | 1348131 | 4 | 1118823..1119014 | 1059..878 | 305 | 89.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:56 has no hits.
UFO05919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:08 Download gff for
UFO05919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cals-RB | 173..1270 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:11 Download gff for
UFO05919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cals-RA | 178..1275 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:15 Download gff for
UFO05919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cals-RB | 181..1278 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:15 Download gff for
UFO05919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1121459..1121577 | 1..123 | 96 | | Minus |
4 | 1119937..1120047 | 767..875 | 98 | <- | Minus |
4 | 1120106..1120606 | 267..766 | 99 | <- | Minus |
4 | 1120659..1120801 | 124..266 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:11 Download gff for
UFO05919.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1140563..1140673 | 767..875 | 98 | <- | Minus |
arm_4 | 1140732..1141232 | 267..766 | 99 | <- | Minus |
arm_4 | 1141285..1141427 | 124..266 | 100 | <- | Minus |
arm_4 | 1142085..1142203 | 1..123 | 96 | | Minus |