UFO05920.5prime Sequence
1137 bp (1004 high quality bases) assembled on 2009-07-25
> UFO05920.5prime
CAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAAACACCACA
CCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTAGCGCCCTT
GAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTACGAGGGCG
ATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGCACAAGTTC
ATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGTGCGGTAGC
AGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCTGGCGGCCA
TGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACATCGGTGCGA
ACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTCGCCAATCA
GCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCATTGACGACT
GCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTCCAGCTCCC
GTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACCTGCACCAC
CACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCTCAGCATGG
AGCTGAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCTCCGTAGTC
TCAGGTTATCTTCCAGGCCTGAGCGACAGTAGCGGCAATCTGGTTGGAGG
CGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCGCTCTACATGC
AACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACGAACTGGCC
GGCAACCAGATCTACTCCGATGTGACCTCCGTTCGCTCGCTGGCCTCCAT
TGGCATTGGGTCGACGGATGGGCGCAAGCTGGTCATCCGGCGAGTGCCCA
CCACCGCCAACGAGCTGTTCGACATGGTCAATCCGCAGAACGCCACCACC
CCCTGGGGGGTGGATGACGATGACAGCTACCTGGACATGTCCGATGAGAC
GGCCCAGCTTCAAGCCGCGCCAGCAGCACTGGTCAATAAAATGCAATTCG
TCCTGGCCTGCATAGGATACTCGGTGGTCTGGCAACGCTCTGGCGTTTCT
GTAATTGTGTCTACAAGAAGTGGGCGGTGGCTTTCTA
UFO05920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-RF | 3436 | CG15444-RF | 501..1618 | 9..1130 | 5255 | 98.5 | Plus |
| ine-RE | 3458 | CG15444-RE | 523..1640 | 9..1130 | 5255 | 98.5 | Plus |
| ine-RB | 3664 | CG15444-RB | 699..1816 | 9..1130 | 5255 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4474329..4474977 | 657..9 | 3245 | 100 | Minus |
| 2L | 23513712 | 2L | 4473692..4473979 | 939..652 | 1440 | 100 | Minus |
| 2L | 23513712 | 2L | 4472031..4472152 | 1077..956 | 485 | 96.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:18:50 has no hits.
UFO05920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:11 Download gff for
UFO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 693..1794 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:46 Download gff for
UFO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 691..1792 | 1..1103 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:44 Download gff for
UFO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 691..1792 | 1..1103 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:44 Download gff for
UFO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4471989..4472158 | 948..1118 | 92 | <- | Minus |
| 2L | 4473685..4473976 | 655..947 | 99 | <- | Minus |
| 2L | 4474332..4474984 | 1..654 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:46 Download gff for
UFO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4471989..4472158 | 948..1118 | 92 | <- | Minus |
| arm_2L | 4473685..4473976 | 655..947 | 99 | <- | Minus |
| arm_2L | 4474332..4474984 | 1..654 | 99 | | Minus |
