UFO05921.5prime Sequence
1140 bp (1015 high quality bases) assembled on 2009-07-25
> UFO05921.5prime
CAGTCGACATGGCCGAAAAGAATGAGTACATCGAATTACCTTGGACCATG
AACTCCTCCAGCGGCGATGACGAGGCGCCGAAGGATCCGCGCACTGGCGG
CGAGGATTTTACGCAACAATTTACAGAGAATGATTTCGAGGTGACTCCGC
CGGCACAGCGAGTTCAATTCATACTTGGCGAGGATGTGGACGATGGCACA
CACGTATCGCATCCCCTGTTTTCGGAAATGGGGATGCTGGTCAAGGAGGG
CGACGAGATCGAGTGGAAGGAGACAGCGCGATGGATCAAATTCGAGGAGG
ATGTGGAGGAGGGTGGCAATCGATGGTCGAAGCCGCACGTGGCCACGCTC
TCCCTGCACTCCCTGTTCGAGCTGCGTCGCCTGCTGGTCAATGGCAGCGT
GATGCTGGACATGGAGGCCCAAAATCTGGAGGTGATGGCCGATCTCGTGT
GCGATCACATGGTCAGTGCGGGAACATTGCCGCCCGGTGTAAAGGATAAG
GTCAAGGACGCGCTCCTGCGACGACATCGGCATCAGCACGAGTATGCCAA
AAAGACGCGACTGCCAATTATTCGATCCCTGGCCGATATGCGCAATCACT
CGTCATCAAAAAAGAAAAAATCTAATTCTAAACACTCGCGACCCGCACAA
AACCTGTCATCGATCACAGAGGACATGGTCAAGAGTCCCAGTAACCAGTC
GATGGCCAGGCCAGGAAGCGGAACGGAACTCAGCGAGCAGCAGCACAAGG
GCAACACCCACTTCATGAGGAAGATACCGCCGGGCGCGGAGGCCAGCAAC
ATTCTCGTGGGCGAGGTTGATTTCCTGGAGCGCACCCTGTCCTGTTTCAT
CCGTCTGAGCCAGGCGGTCGTCCTGGGGCGATCTCACCGAGGTGCCAGTG
CCCACAAGATTCGTCTTCATCACTGCTTGGTCCGCCTGGCAGTCAGAGCA
ACTTTCCACGAGATTGGCGCGGCGATGGCCACCCTGATGTCCGACCAGAT
CTTTCACGGAGGTGGCGTACCGTGCCCGCAGCGGGATCATCTGCTCTCCG
GGAGTGAATGGATTCCTCGGATGGGGGTGACCGTACCTGGCCGCCCAGGA
GAATGGAATCCAACATATACAAATGGACCACAGCGGCATC
UFO05921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RA | 3839 | CG42253-RA | 294..1414 | 9..1137 | 5130 | 97.8 | Plus |
| Ndae1-RE | 4563 | CG42253-RE | 826..1814 | 141..1137 | 4470 | 97.5 | Plus |
| Ndae1-RD | 4218 | CG42253-RD | 826..1814 | 141..1137 | 4470 | 97.5 | Plus |
| Ndae1-RE | 4563 | CG42253-RE | 516..619 | 38..141 | 520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7234527..7234998 | 612..141 | 2360 | 100 | Minus |
| 2L | 23513712 | 2L | 7230889..7231183 | 908..613 | 1430 | 99.7 | Minus |
| 2L | 23513712 | 2L | 7237687..7237790 | 141..38 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 7230458..7230600 | 1051..907 | 470 | 94.5 | Minus |
| 3L | 28110227 | 3L | 9780810..9780930 | 260..380 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:19:02 has no hits.
UFO05921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:16 Download gff for
UFO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 288..1404 | 3..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:54 Download gff for
UFO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 291..1407 | 3..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:52 Download gff for
UFO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 291..1407 | 3..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:52 Download gff for
UFO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7230889..7231183 | 613..908 | 99 | <- | Minus |
| 2L | 7234527..7234997 | 142..612 | 100 | <- | Minus |
| 2L | 7237687..7237790 | 38..141 | 100 | <- | Minus |
| 2L | 7240182..7240213 | 3..37 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:54 Download gff for
UFO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7230889..7231183 | 613..908 | 99 | <- | Minus |
| arm_2L | 7234527..7234997 | 142..612 | 100 | <- | Minus |
| arm_2L | 7237687..7237790 | 38..141 | 100 | <- | Minus |
| arm_2L | 7240182..7240213 | 3..37 | 91 | | Minus |
