UFO05923.5prime Sequence
1088 bp (979 high quality bases) assembled on 2009-07-25
> UFO05923.5prime
CAGTCGACATGGAACACCACGAGGACAACGCGCAGTTGGACAACTACTTG
CAGAACCGCCTGGCCGAAAGTCTGCAAATTTGCGGAGGCGCCGGCGAGCA
TAATCCTCATCTGGCAGACGCTACTGGGGGGAACGGCTGCGCTCCTGGCA
TTGCGCCCTCAAAGTCGGACGAAGTCGACGGGGAAGAAGACGAGGAGTGG
AAGTACATACACGAGGTGCGGCAGAGTGAAAAGCTTCAACAGGAAAAGCT
TCCACTGACAAAGGAAACCGGCAATGGCTTCGGGCCCGGACGGGACTCAG
ATAATCAAGTTCACGGAAACGGAGCTGCCGCTGTCTTCAATCTGTACGAA
GAGGACGTGGAAGTGATCAAGAACGATGGTGACTTCTCGACAAATTCTAA
CACCACTACTTCAACGGACGAGGTAGTTGCCAGGCAGGCCCAGGAGCCAA
ACCAGTTGCCGGAGCAGCTTCAACAGCAGCAGCAGATAGAATCACAAGGT
GTTCACGAGGATCCCCGTCAGGAAGATGAGGATGAGCACAGCTCCGTGGC
CACTACTTATGGAACAAGCAGTCTCAGTGAGAACAACTCCTCGCCTTTAG
ATCAGGAGGAGGTCGTTATGGTGGCCCAAACGGTTGGTCAAGAGCAGTTA
GTGGACTTCGACAACAAGGAAAACTCCTATTTTGTTAAAAACCTGGAAGA
AAACCACTCGCAGCTAAACCCCAATGCTGTGGCCTTTGTGCCTGGCGTTG
GCTCACAATCATCCTCTCCCCTTCCTGCTGCTGAAGATCCACTACCTGGT
GTTCAGCCCCGCCCATTTCTACCGGGAGGGACCCTTGACGATTTGGTGGC
GGAAAGTCCGCGGAAAGAATTCGCCCGAATCAACATGGATGGTATTGCCG
TGCCCGACGAGCGGGAATTTGACATTGAAGCGGATATGCGACCCCACGAG
TTGGGAGCAGAATCGGACACTTTTGGGCAGACCCTGGAGATGCAGTTGTT
GAACCGTATAGAACCGCTGACAGCAGCTATGGATGTTCTGATCACGTCAG
ACAATGTCGATTGGAATGCACTAAATCAGTGCCACGAC
UFO05923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Map205-RC | 5818 | CG1483-RC | 446..1493 | 9..1046 | 4935 | 98.7 | Plus |
| Map205-RB | 4733 | CG1483-RB | 446..1493 | 9..1046 | 4935 | 98.7 | Plus |
| Map205-RA | 4243 | CG1483-RA | 446..1493 | 9..1046 | 4935 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32066980..32067996 | 1021..9 | 4800 | 98.8 | Minus |
Blast to na_te.dros performed 2014-11-28 22:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6915 | 434..610 | 161 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1187 | 442..578 | 156 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2357 | 388..485 | 143 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6824 | 440..542 | 138 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2523 | 399..590 | 130 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2389 | 434..496 | 126 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1138 | 389..485 | 126 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6862 | 434..539 | 124 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6925 | 441..589 | 116 | 55.6 | Plus |
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4386..4451 | 426..491 | 114 | 63.6 | Plus |
UFO05923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:34:49 Download gff for
UFO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RB | 442..1469 | 2..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:04 Download gff for
UFO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RA | 443..1470 | 2..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:12 Download gff for
UFO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RA | 443..1470 | 2..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:12 Download gff for
UFO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32066991..32067999 | 2..1011 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:04 Download gff for
UFO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27892713..27893721 | 2..1011 | 99 | | Minus |
