UFO05925.5prime Sequence
1126 bp (985 high quality bases) assembled on 2009-07-25
> UFO05925.5prime
CAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGGAAGCTCTC
CCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCGCTGCACGA
GGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCTGTTCAGCA
ATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCCCGCTCCAT
GAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATCTGCACGCC
CCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAAGGGACAGA
AGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGGCCCACCAG
ACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAACAACGAAGG
GTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCAGAGCTCTA
GGGAGCTACTGCTGGCCGGCGCCGATCCCGATGTCCGGAATAATTATGGA
GATACTCCGCTGCACACCGCCTGCAGATATGGACATGCAGGAGTCTCCCG
GATCCTGCTCTCCGCCCTTTGCGATCCGAATAAAACAAATCTGAACGGCG
ACACCGCTTTGCACATCACCTGTGCCATGGGTCGCAGGAAGCTGACAAGG
ATTCTCCTAGAGGCAGATGCTCGGCTGGGCATTAAAAACGCACAAGGCGA
CTGCCCCATGCACATAGCGATCAGGAAGAACTACCGTGAAATCATCGAGA
TCCTGAACACGCCGAAGAAGATACGGAATCGCAAGGAGAAACCCAAAGGA
GGGCGGCAGCAGATCGGACAAGGACAGAGATCGTGAAAGGATGTGGTGGA
CAAGGGTATCAACTGGTCACCCCTATGGCTGTCACTACTTTCCCGATCCG
CGTGCCCTTCCTTCACCAAAACTGGAGACACTGCCCAAGAGCCACTTTAA
GTCGGGGGGAGCAATACTTCTTGGATTTGGCTGGTCATATTCACCAGGGT
CCCGGTCAGCGTGGGCAACACATGCTATGCGTCCTTCTTCCGTCCCCATG
AAACAAACTAATGCAATCGAAGGAGTTGAGAAATACGTTCCACACAGACG
TCTAGGTCCAAGTTCAGGCATTGCCA
UFO05925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..1724 | 9..1123 | 5000 | 97.3 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..1327 | 9..1123 | 5000 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10817963..10818493 | 1028..495 | 2290 | 97.4 | Minus |
| 2R | 25286936 | 2R | 10818549..10818975 | 494..68 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 68..9 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:19:09 has no hits.
UFO05925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:25 Download gff for
UFO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 577..1715 | 1..1125 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:03:59 Download gff for
UFO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1329 | 9..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:55 Download gff for
UFO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1329 | 9..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:55 Download gff for
UFO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10817850..10818493 | 495..1125 | 95 | <- | Minus |
| 2R | 10818549..10818974 | 69..494 | 100 | <- | Minus |
| 2R | 10819041..10819106 | 1..68 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:03:59 Download gff for
UFO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6705355..6705998 | 495..1125 | 95 | <- | Minus |
| arm_2R | 6706054..6706479 | 69..494 | 100 | <- | Minus |
| arm_2R | 6706546..6706611 | 1..68 | 95 | | Minus |
