UFO05926.5prime Sequence
1164 bp (1040 high quality bases) assembled on 2009-07-25
> UFO05926.5prime
CAGTCGACATGTCGCTTCTACAGCTATCGCCGCTCCTCGCACTCCTGCTA
CTCCTCTGCAGTAGTGTGAGCGAGACAGCTGCGGACTACGAGAACACCTG
GAACTTCTACTACGAGCGTCCCTGTTGCACTGGAAACGATCAGGGGAACA
ACAATTACGGGAAACACGGCGCAGATCATGTGCGGGAGTTCAACTGCGGC
AAGCTGTACTATCGTACATTCCATATGAACGAAGATCGAGATACGCTCTA
TGTGGGAGCCATGGATCGCGTATTCCGTGTGAACCTGCAGAATATCTCCT
CATCCAATTGTAATCGGGATGTGATCAACTTGGAGCCAACACGGGATGAT
GTGGTTAGCTGCGTCTCCAAAGGCAAAAGTCAGATCTTCGACTGCAAGAA
CCATGTGCGTGTCATCCAGTCAATGGACCAGGGGGATAGGCTCTATGTAT
GCGGCACCAACGCCCACAATCCCAAGGATTATGTTATCTATGCGAATCTA
ACCCACCTGCCGCGCTCGGAATATGTGATTGGCGTGGGTCTGGGCATTGC
CAAGTGCCCCTACGATCCCCTCGACAACTCAACTGCGATTTATGTGGAGA
ATGGCAATCCGGGTGGTCTGCCCGGTTTGTACTCCGGCACCAATGCGGAG
TTCACCAAGGCGGATACGGTTATTTTCCGCACTGATCTGTATAATACTTC
GGCTAAACGTTTGGAATATAAATTCAAGAGGACTCTGAAATACGACTCCA
AGTGGTTGGACAAACCAAACTTTGTCGGCTCCTTTGATATTGGGGAGTAC
GTGTATTTCTTTTTCCGTGAAACCGCCGTGGAATACATCAACTGCGGCAA
GGCTGTCTATTCGCGCATCGCACGGGTGTGCAAGAAGGATGTGGGGTGGA
AAGATCTGCTGGCCCACAACTGGGCCACCTACCTGAAGGCCAGACTCAAC
TGCAGCATCCTCCGGCGAATTTCCGTTCTATTTCAACGAGATCCAATCGG
TCTTACCAGCTGCCCTCCGATAAGAGTCGAATTCTTCGCCACCATTCACG
ACCGAGCCACTAATGGGCTCGAATGGGAATCTTGCCGGTATGCCAGATTT
CCACATCTACCGAGATCAGCTGCCCTCAAGGCAATTTCAAAGGAACATCT
TCATCGATTCGCAT
UFO05926.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 3440 | CG4700-RE | 238..1375 | 9..1157 | 5165 | 97.7 | Plus |
| Sema-2a-RA | 3580 | CG4700-RA | 378..1515 | 9..1157 | 5165 | 97.7 | Plus |
| Sema-2a-RB | 3481 | CG4700-RB | 279..1416 | 9..1157 | 5165 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16529359..16529635 | 763..1042 | 1175 | 97.1 | Plus |
| 2R | 25286936 | 2R | 16517176..16517341 | 9..174 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 16528899..16529036 | 492..629 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 16529107..16529240 | 629..762 | 670 | 100 | Plus |
| 2R | 25286936 | 2R | 16528539..16528650 | 381..492 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16525371..16525462 | 172..263 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 16527614..16527682 | 315..383 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 16424300..16424534 | 768..1003 | 290 | 75.8 | Plus |
| 2R | 25286936 | 2R | 16525709..16525764 | 259..314 | 265 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:26 has no hits.
UFO05926.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:27 Download gff for
UFO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RA | 314..1390 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:11 Download gff for
UFO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 271..1347 | 1..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:16 Download gff for
UFO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 271..1347 | 1..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:16 Download gff for
UFO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16529108..16529240 | 630..762 | 100 | -> | Plus |
| 2R | 16529359..16529673 | 763..1087 | 95 | | Plus |
| 2R | 16517168..16517341 | 1..174 | 97 | -> | Plus |
| 2R | 16525374..16525461 | 175..262 | 100 | -> | Plus |
| 2R | 16525713..16525764 | 263..314 | 100 | -> | Plus |
| 2R | 16527614..16527682 | 315..383 | 100 | -> | Plus |
| 2R | 16528542..16528649 | 384..491 | 100 | -> | Plus |
| 2R | 16528899..16529036 | 492..629 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:11 Download gff for
UFO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12412879..12412966 | 175..262 | 100 | -> | Plus |
| arm_2R | 12413218..12413269 | 263..314 | 100 | -> | Plus |
| arm_2R | 12415119..12415187 | 315..383 | 100 | -> | Plus |
| arm_2R | 12416047..12416154 | 384..491 | 100 | -> | Plus |
| arm_2R | 12404673..12404846 | 1..174 | 97 | -> | Plus |
| arm_2R | 12416404..12416541 | 492..629 | 100 | -> | Plus |
| arm_2R | 12416613..12416745 | 630..762 | 100 | -> | Plus |
| arm_2R | 12416864..12417178 | 763..1087 | 95 | | Plus |
