UFO05937.5prime Sequence
1108 bp (989 high quality bases) assembled on 2009-07-25
> UFO05937.5prime
CAGTCGACATGGCCTACAATCCCAACAGCAGCGCCGAGGATAACGCATAC
GAGGATGACGAAGTAACAGAAGGTGCCTTACAGGTCTGGCGGACCCTGCC
GGAGCGCATTCGTCAGGATCCCAGTCTAGCCTCCTTTCGCCAGGAGCACG
AACGTCTGCATGGCGATGTGGACCAGCTGCACGCGGAGGAGTCGGAATTG
CGTGTGCAGAATGGACACCACGAGGAGACGGCGCTGGCCAACCAGCCATT
CACACAGATCGGGATCAATGTGACGAACGAGGCGGGTCAGGTGCGGGTGC
TCGATGGCAGGGATCTGGAGAATAACAACGATGATCAACACGACGAGGCC
GAGCCGCATGCCAAGAGTTTGATACGAAAGTATCTCATCTGGTTTAAGAT
AGCCATACTCCTGGTGGTCTGGTGCGTCTTCACCGCCTTCCTGATGTCCA
ACAACGAGCATGTGGACCAACTGAGCCTCATTAGTGTTCCTAGGAATAGC
TCACCCAGAGTATTTCCCATTGCCACCGCCAGTCTGCAGAGGATTGGCCT
GGGCCTGCGCGGACCCTTCCGCCTGCAGGAGAACGAACTGGCCATTAACG
CGAGTGTTCCACTGCCCCTGCTCCAGGTGCAGGTGATGCGCAGCTATTTC
GATGGCGAGGGCATGGAGATCTACATCGAGAACGCCAGCCAGGTGTGGCA
ACTGGACGTGGTCTATCCCGATCTGATAGACGCCACCAGGGATACGAAGA
AGCAGCGTACCTTCGAGCTGAGTCCCACTGATCCCTTATGGTTGGCCCAG
GCCAATCGCACGGAGCTGAGCTTCGAGTTCACCAGCTCCATTGAGGGCGA
ATTGCCGCTCCAACTGAATGTGGATGAGTCGCCCATCTATAAGCGGGATG
GAGTCATCTATGCTGCGGCTGTGCTCTGCGGCTTGTACGTGATGATCATC
TGGGAGATTGTGAATCGACCTTTGCTGCATCATCGCATCCACCTTGTCGG
TGGTATACTGCTGCACTGACTCAGCCCTCGATGGCACCATCATGGTCTGG
ATGATGTGGAGAAACTGCTGCTGCTTTCGCATGATGATCTTGGGCCATTC
CTCCGAAC
UFO05937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hoe1-RA | 3246 | CG12787-RA | 407..1518 | 9..1106 | 5150 | 98.4 | Plus |
| hoe1-RI | 3462 | CG12787-RI | 672..1734 | 58..1106 | 4905 | 98.3 | Plus |
| hoe1-RE | 3512 | CG12787-RE | 722..1784 | 58..1106 | 4905 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4910800..4911513 | 1075..371 | 3100 | 97.9 | Minus |
| 2L | 23513712 | 2L | 4911722..4911868 | 311..165 | 735 | 100 | Minus |
| 2L | 23513712 | 2L | 4912672..4912778 | 165..59 | 535 | 100 | Minus |
| 2L | 23513712 | 2L | 4911581..4911645 | 371..307 | 325 | 100 | Minus |
| 2L | 23513712 | 2L | 4915047..4915096 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:19:23 has no hits.
UFO05937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:45 Download gff for
UFO05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RA | 398..1505 | 2..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:04:08 Download gff for
UFO05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RA | 404..1511 | 2..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:49:02 Download gff for
UFO05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hoe1-RA | 404..1511 | 2..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:49:02 Download gff for
UFO05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4911723..4911867 | 166..310 | 100 | <- | Minus |
| 2L | 4912672..4912778 | 59..165 | 100 | <- | Minus |
| 2L | 4915047..4915099 | 2..58 | 92 | | Minus |
| 2L | 4910771..4911512 | 372..1100 | 97 | <- | Minus |
| 2L | 4911581..4911641 | 311..371 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:04:08 Download gff for
UFO05937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4910771..4911512 | 372..1100 | 97 | <- | Minus |
| arm_2L | 4911581..4911641 | 311..371 | 100 | <- | Minus |
| arm_2L | 4911723..4911867 | 166..310 | 100 | <- | Minus |
| arm_2L | 4912672..4912778 | 59..165 | 100 | <- | Minus |
| arm_2L | 4915047..4915099 | 2..58 | 92 | | Minus |
