UFO05939.5prime Sequence
1126 bp (984 high quality bases) assembled on 2009-07-25
> UFO05939.5prime
CAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGATGTTAGTT
AATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTGACGATCGT
GGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAAACAAGACA
AAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCAAGATTTTG
GACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTCATCTACAA
TGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTGGCACAGCA
CGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACGAGTGGGAT
TGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGCGAGGTGCT
GCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTACACGCCGG
TGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCCATGCCATG
CGCTACGAAGTCAGCCGAGATGTGGAGGCCCAGGGCCTGTGCCCCTACAG
CCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTTGTACAGCG
CCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACAGGGAGAAC
CTGCGTACCGAACAATATGATCTCAAGCAACTCAACCAGCCGGACTTTGT
TGGCGCCATCGAGCGCAACGGTTACGTGCTGTTCTTCTTCCGCGAACTCT
CAATGGAAGTCATGAACTTTGGCAAGGCCGTTTATTCGCGCGTCGCCAGG
GTTTGCAAGAACGATAGAGGTGGTCCCTACAGTCACGGCAAGAGTTGGAC
TTCCTTCCTTACGCGCGACTCAACTGCTCGGTGCCCGGCGAGTTTCCGTT
CTATTTTGACGAACTCAGGCCATTAGTCGATTGTGAGAGCGGATCCAGTC
ACTGATTTATGCTGTCTTCACACTCTGTGATGCATCTGCTCGCGTATGCG
CATTTACGTAACGATTACTGCGCTTTGATGAAGTCAGTCCAAAAGATCCA
AGTCCATGCTGCATGGAGCGTGACAGGCGAACCAGTCAGACGTGCCTTTG
AGACTGAACTGACGATCGGTTTATTT
UFO05939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 3910 | CG6446-RC | 575..1603 | 9..1020 | 4720 | 98.2 | Plus |
| Sema-1b-RB | 4262 | CG6446-RB | 479..1507 | 9..1020 | 4720 | 98.2 | Plus |
| Sema-1b-RA | 4269 | CG6446-RA | 486..1514 | 9..1020 | 4720 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17675915..17676593 | 913..236 | 3330 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17678272..17678404 | 141..9 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 17677825..17677919 | 236..142 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:40 has no hits.
UFO05939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:46 Download gff for
UFO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RB | 393..1430 | 1..1023 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:15 Download gff for
UFO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1516 | 1..1023 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:23 Download gff for
UFO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1516 | 1..1023 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:23 Download gff for
UFO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17675911..17676593 | 236..916 | 99 | <- | Minus |
| 2R | 17677826..17677919 | 142..235 | 100 | <- | Minus |
| 2R | 17678272..17678411 | 1..141 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:15 Download gff for
UFO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13563416..13564098 | 236..916 | 99 | <- | Minus |
| arm_2R | 13565331..13565424 | 142..235 | 100 | <- | Minus |
| arm_2R | 13565777..13565916 | 1..141 | 97 | | Minus |
