UFO05940.5prime Sequence
1096 bp (990 high quality bases) assembled on 2009-07-25
> UFO05940.5prime
CAGTCGACATGGGGATTTCAAAATTAGTGAGTGGTCATACCATTCCATTC
CATTTTCGAAATCGCATATCTGCACGTAAATGTAACCTGTACATTGTATT
ATTGTTAAAACAGACCTCACACGAAAGCGAACCAGATTCGCCACACCCCA
TTGGCGGAGGAGGGTCGTTGCATATGTCGCAGTCGTACACCACCACTCCG
TGCTACCGACCGCGTTCGTCATCCGTGCCGCGTTTCACCTACGGCAGTAT
ACCGCCTCGATCGGAGTCGCCCTTCGGCACCGCTTCCTCCACGTGCTCCT
CGCTACGCGGCGGCGTGGAGAGCGATGCTGGTATCTACCATCAGCGTCAT
CGGCCGGCGATCAGTCCGCCGGAGACGAGGGCCTTCCTCCACGAGGCGCT
CGACGAGGTGTGCAGCGATTTCGAGCGGACGCTGGAGCGGACTTCCGTAA
AGCGACGCAAGTCTCCCTATGGAGCTGGATCCCTGTCCATGGATCGGAAT
AACAACAAACTTAGCCTGAGCATCAGCAATGGCCATGGCGCATTGAAGGA
GCTCAAGAGTCATCGCCTGGGCAACAGCACGTGGGATCGGCACTTTGATG
TGGCAGATTCCTGCATTGGCGGCAATCAATCGCCCACGGGCACGCCGCGC
CCCTTTCTGCGATCCAACACCCTTCCTCTGCGACAGCGACCCAGTCCGGC
GGAGGTCCAATATGAAAGCTACGTGCAGGCCACGGTGGCGGCCAATGCCA
AGTCGCCGGTGGAGCAGCTGGAGAGCGCAAAGTCTCCAGGTGCTCCGCCA
CCACCGCCTCCGAGGCGCCACCACCTGTTGGCCACCACGCCCACGGGAAA
CCCACTTTCAAGGAGATCGACCGCAGAGAATGGTTCCGTAAGCAGCAGCT
CCTGCAGTCGCCAGTCATCTCGGAAACGGGTCAGACTACGGCAGATGCAC
AGCTCTGTTCAGATACAAGAACAAATGGCCTGAGCCTGAGGCGTCTTAGA
TTCTGGAGGAACAGTGAAAGTCATACCGACTGGACCTGGACTTATTCTCT
TCGCTCGGAAAGCAAATGCTGCCGAACAGAGATGATGCAAGTCACG
UFO05940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RA | 4221 | CG10249-RA | 49..1114 | 9..1061 | 4915 | 98.2 | Plus |
| CG10249-RG | 5340 | CG10249-RG | 1271..2233 | 112..1061 | 4400 | 98 | Plus |
| CG10249-RD | 4880 | CG10249-RD | 811..1773 | 112..1061 | 4400 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14910224..14910821 | 606..9 | 2990 | 100 | Minus |
| 2R | 25286936 | 2R | 14905524..14905955 | 1027..605 | 1635 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:52 has no hits.
UFO05940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:47 Download gff for
UFO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 44..1129 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:14 Download gff for
UFO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 44..1129 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:58 Download gff for
UFO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 44..1129 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:58 Download gff for
UFO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14905514..14905953 | 607..1035 | 96 | <- | Minus |
| 2R | 14910224..14910825 | 1..606 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:14 Download gff for
UFO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10793019..10793458 | 607..1035 | 96 | <- | Minus |
| arm_2R | 10797729..10798330 | 1..606 | 99 | | Minus |
