UFO05944.5prime Sequence
524 bp (18 high quality bases) assembled on 2009-07-25
> UFO05944.5prime
CAATCCACATGTCCGACGTTGAGCAGGCGATTAAGGCCCACCAGCCGCAA
CCGTCTCATTTGGACTGCTCCATTGACGATGAGACGGATGCCCCCCAATT
CTTAGGCCTGGGCGGAGTGGGTGGTGCGGGTTGTGGATCGGACATGGGTG
CCAAGACCACCGCTTCGCTGACCGCCAAGCCGCGCAGCTTTTCCGGCGCT
GCTGCGGTCACTTGCTCAAGCTGCTCTTCTCCACGCCCGGCCTGGTGCTC
CTGGTCATCGGCTACTCCGTGCTGGGCGGGCTCCTCTTCCCGCTGCTGGA
GGCGCCGCAGGACATCACTTAGTCGGCTGCCATTGCCAAGAGCCGGGAGG
ACTGCTTGCGCGAACTCTGGATCATTACAGAGAAACTCAACGTTCTGTAG
AACGCAACTGGACGATGTTGGTCCACGAGCAGCTGCATCCCTTCCAGGGC
TCCATTGTGGCGGCCACGCGCCAAGGATCTGCTGGCTCCTCCAGCGGATG
ATGAGCACGACTCTTCCGCCATGG
UFO05944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1688-RA | 4116 | CG1688-RA | 1158..1669 | 8..517 | 2180 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9779366..9779739 | 380..8 | 1595 | 95.7 | Minus |
| 2R | 25286936 | 2R | 9777069..9777209 | 517..378 | 550 | 94.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:21 has no hits.
UFO05944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:48 Download gff for
UFO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1144..1665 | 1..524 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:49 Download gff for
UFO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1154..1675 | 1..524 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:54 Download gff for
UFO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1154..1675 | 1..524 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:54 Download gff for
UFO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9777062..9777206 | 381..524 | 92 | <- | Minus |
| 2R | 9779366..9779743 | 1..380 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:49 Download gff for
UFO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5664567..5664711 | 381..524 | 92 | <- | Minus |
| arm_2R | 5666871..5667248 | 1..380 | 94 | | Minus |
