UFO05945.5prime Sequence
1112 bp (995 high quality bases) assembled on 2009-07-25
> UFO05945.5prime
CAGTCGACATGCGATTCGCTCTGGCCACCGTGGCCATCATCTGGGCTTTA
TTCGTCCTGGCCGACGGAGTGGACCCCGGGAACTTTAAGACCTGCGAGCA
GAGCAGTTTTTGTCGACGCTCCCGAAAGATTCAGGGATCGGGCAGCAAGT
ACGCCTTAATTCCCGGCACCTTGAACACCTATGCGGATTCGTTGACCGCT
GATCTCGTTAACAAGGAAAACCATCACCAGTTTGCCTTTAAGCTAGAGGC
TCTGGTGGGCAGTACCTTCCGCCTGCAGATCGATGAAAAGCAGCCACTTC
GGCCACGATATCGCGTCGAGCACGCTCTGAAGGGCCCAACCCAGGCCGGA
CGCATTCGTGTCCAGCGGGAAACAGATGGAGAGATCGTTATCACATCGGA
GAAGAACAAGGCTGTGATCCACGGAGACCCGTTCCGCATCGATTTCTTCG
AGAACGACGTGCTGGTGGTCTCGGTGAATGCCAAGAACTGGTTGTACTTT
GAGCATCTGCGGCAGAAGGCCCAGGAACCGACCTCCCACCCGGCGGAAAA
CGAGAATCAGCAGGAGCAGGATGCCGCTGTCGAAACTCCTAAAGCAGCAG
ATACTATCGATGATCCTGGTGCATGGGAGGAGAACTTCAAATCACACCAC
GACTCTAAGCCCTACGGTCCGGAAGCTGTGGCTCTGGACTTTTCGTTCCC
CGCAGCCAAAGTTCTATTCGGTATTCCAGAGCACGCCGACAGCTTCATAC
TAAAGTCCACCTCGGGTACGGATCCTTACCGCCTGTACAACCTGTATGTG
TTCGAATACGTTGTGGACAGCAAGATGGCCCTGTACGGCTCAGTGCCGGT
AATCTATGGTCATGGAGCGCACGCACAGCGGGCGTTTACTGGCAGATGCC
GCTGAAACTTGGGTGGACATTCAAACGTCGGCGACCAATGTTGTATCTTC
GCTGGTAAATTTTGTATCCGGCTCGCAGAAGACTTCCTCCTCCGGCTGCC
CACTTTATGTCGGAGTCAGGCATCGGGGACGCTTACTTCATGGTGGGGAC
CAGCCATGACACTTTAAGACAGTACGCGCCTCTGACTGGAACACCGAGTA
CCAAGTAATTTT
UFO05945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14476-RC | 3252 | CG14476-RC | 136..1232 | 8..1099 | 5105 | 98.2 | Plus |
| CG14476-RE | 3264 | CG14476-RE | 246..1342 | 8..1099 | 5105 | 98.2 | Plus |
| CG14476-RD | 3129 | CG14476-RD | 111..1207 | 8..1099 | 5105 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21602981..21603731 | 865..115 | 3740 | 99.9 | Minus |
| X | 23542271 | X | 21602597..21602823 | 1094..871 | 715 | 91.7 | Minus |
| X | 23542271 | X | 21604463..21604570 | 115..8 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:05:17 has no hits.
UFO05945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:49 Download gff for
UFO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 112..1230 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:36 Download gff for
UFO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 112..1230 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:22 Download gff for
UFO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 103..1221 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:22 Download gff for
UFO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21602577..21602829 | 866..1111 | 91 | <- | Minus |
| X | 21602981..21603730 | 116..865 | 99 | <- | Minus |
| X | 21604463..21604576 | 1..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:36 Download gff for
UFO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21473604..21473856 | 866..1111 | 91 | <- | Minus |
| arm_X | 21474008..21474757 | 116..865 | 99 | <- | Minus |
| arm_X | 21475490..21475603 | 1..115 | 97 | | Minus |
