UFO05946.5prime Sequence
1110 bp (1022 high quality bases) assembled on 2009-07-25
> UFO05946.5prime
CAGTCGACATGTGCAGCCTGACGCCAAACCACATGGTAAACGTAACGCAG
CAGCACCTACACGATCTATTGGAAACTTTCGAAAAAAAGTCCTTCGAGGC
GGCGGCCTTTGAGGAAGGGACGGCGGAGTACGACATCTCCAAAAAATGCG
AATACCTGTTTAAGCTCGACTACAGCCTAATTGAGCTGGATAATACGAAC
GGATTGCTCAGTCCGCGATATCCTGGCCGAATACTCATCCCGGAATATGA
GCACGGGCACATGGCCAAGACGCTGGTACCGGGAAATGGACTCTTCGGGC
AAGTTGGTGGGGGAGTGGGAGGTGGAGGCTCCTCGGGAACAACCGCCACT
GCCACGCCTCTGAACAGCAGTGCAGGAAGCACCGGAAGTGAGGGTGTGGG
CATCCAAGCCTTTGTGACCTTTGCCAATCCCCTGCAGACGCAACAACAGC
ATCCGCTCCAGCAACAATATCCCTCGCAGCAGATGCATCCCCTCCACGCG
CAATATCCCTCCCAGCAGCCACATCCACTCCAGCAGCAGCAGCAGCAGCC
ATCGCAACAGCAACCACAAAATACGATATACGAGGATCAGTATGATATCC
AGCGAATGCGGGAATTGGTAACGATGGCCAAATATGCGAGATGCCGTCAA
AGATTCGCCGTGCCTGTGATTATGTATCGCGGAAAGTACATATGCCGCTC
TGCCACGCTATCCGTCATGCCAGAAACCTACGGCCGAAAAGTGGTGGACT
ATGCCTACGACTGCCTGAGTGGCGGCAATTACACCGCGCCAAACGGAGAA
GAGAACGATGCTGACTCCACGGACGAGTCGCTGATCACCCACATGCACGA
CCAGGCGCAGTCGCAGTTCAGCTACGACGAGTCATCAGAGTGACATCCAG
CTGCTGCATACGCTCAATGTCTCAACCATGGTGGACCTCATGGTCGAAAA
CCGCAAATCAAATACTTCATGGCCGTTTCCTCGTCAAAGAAAGCGGATCC
CAACAAGCACTATAAGAAGCTTTACGTCATCCCTGCCGTATCCGGGCTGT
GGGTCTTCAAGTCGACAATATACTGGCTTGACTGACTACACTGAAGCAAC
GTTCAGATGC
UFO05946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EDTP-RC | 3151 | CG6542-RC | 487..1544 | 9..1060 | 5045 | 98.9 | Plus |
| EDTP-RA | 3130 | CG6542-RA | 487..1544 | 9..1060 | 5045 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17434125..17434976 | 973..125 | 4095 | 99.5 | Minus |
| 2R | 25286936 | 2R | 17444335..17444452 | 126..9 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 17433979..17434058 | 1051..974 | 230 | 88.8 | Minus |
Blast to na_te.dros performed 2014-11-28 23:17:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6903 | 435..616 | 225 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2449 | 421..571 | 224 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2543 | 435..581 | 206 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6921 | 432..571 | 205 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6865 | 458..602 | 203 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2477 | 435..572 | 191 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6882 | 432..568 | 189 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..6946 | 434..551 | 186 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2395 | 481..571 | 165 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6777 | 510..568 | 160 | 74.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6676..6798 | 455..568 | 151 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1585 | 433..502 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2962 | 435..568 | 138 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1163 | 418..534 | 136 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6693..6756 | 506..568 | 128 | 68.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6059..6114 | 431..486 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2347 | 531..571 | 115 | 75.6 | Plus |
UFO05946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:35:34 Download gff for
UFO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1544 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:50 Download gff for
UFO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1544 | 9..1060 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:05:42 Download gff for
UFO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1544 | 9..1060 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:05:42 Download gff for
UFO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17433969..17434058 | 974..1060 | 91 | <- | Minus |
| 2R | 17434125..17434975 | 126..973 | 99 | <- | Minus |
| 2R | 17444336..17444452 | 9..125 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:50 Download gff for
UFO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13321474..13321563 | 974..1060 | 91 | <- | Minus |
| arm_2R | 13321630..13322480 | 126..973 | 99 | <- | Minus |
| arm_2R | 13331841..13331957 | 9..125 | 100 | | Minus |
